STRINGSTRING
MY1_1370 MY1_1370 MY1_1476 MY1_1476 MY1_1478 MY1_1478 MY1_1758 MY1_1758 MY1_1979 MY1_1979 MY1_0262 MY1_0262 MY1_0274 MY1_0274 MY1_0454 MY1_0454 MY1_0492 MY1_0492 ubiX ubiX MY1_1141 MY1_1141 MY1_1161 MY1_1161 MY1_1174 MY1_1174
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
MY1_1370Alcohol dehydrogenase GroES domain protein; COG matches:COG1064; PFAM matches:PF08240, PF00107. (343 aa)
MY1_1476Rieske (2Fe-2S) domain protein; COG matches:COG2146; PFAM matches:PF00355, PF03358. (366 aa)
MY1_1478Glyoxalase/bleomycin resistance protein/dioxygenase; COG matches:COG2514; PFAM matches:PF00903. (285 aa)
MY1_17584-oxalocrotonate tautomerase; PFAM matches:PF01361. (58 aa)
MY1_1979AMMECR1 domain protein; COG matches:COG2078; PFAM matches:PF01871. (191 aa)
MY1_0262Rieske (2Fe-2S) domain protein; COG matches:COG2146; PFAM matches:PF00355. (102 aa)
MY1_0274Dioxygenase; COG matches:COG1355; PFAM matches:PF01875; Belongs to the MEMO1 family. (277 aa)
MY1_0454Putative Rieske [2Fe-2S] domain protein; COG matches:COG2146; PFAM matches:PF00355. (105 aa)
MY1_0492Alcohol dehydrogenase GroES domain protein; COG matches:COG1064; PFAM matches:PF08240, PF00107. (350 aa)
ubiX3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. (187 aa)
MY1_1141Rieske (2Fe-2S) domain protein; COG matches:COG2146; PFAM matches:PF00355. (100 aa)
MY1_1161Alpha/beta hydrolase fold protein; COG matches:COG0596; PFAM matches:PF00561. (231 aa)
MY1_1174Double-stranded beta-helix fold enzyme; COG matches:COG1917; PFAM matches:PF07883. (150 aa)
Your Current Organism:
Nitrosarchaeum koreense
NCBI taxonomy Id: 1001994
Other names: Candidatus Nitrosoarchaeum koreensis MY1, N. koreense MY1, Nitrosarchaeum koreense MY1, Nitrosopumilus sp. MY1
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