(7 nodes) Mixed, incl. Mitochondrial transcription initiation, and Helix-hairpin-helix motif network (Dipodomys ordii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Tefm	Transcription elongation factor, mitochondrial. (363 aa)
	Tfam	Transcription factor A, mitochondrial. (245 aa)
	Polrmt	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family. (1190 aa)
	Gabpa	GA-binding protein alpha chain isoform X1. (454 aa)
	Gabpb1	GA-binding protein subunit beta-1 isoform X3. (383 aa)
	Nrf1	Nuclear respiratory factor 1. (534 aa)
	Tfb2m	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (398 aa)

Your Current Organism:

Dipodomys ordii

NCBI taxonomy Id: 10020
Other names: D. ordii

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Gabpa	Gabpb1	ENSDORP00000014021	ENSDORP00000015480	GA-binding protein alpha chain isoform X1.	GA-binding protein subunit beta-1 isoform X3.	0.989
Gabpa	Nrf1	ENSDORP00000014021	ENSDORP00000018876	GA-binding protein alpha chain isoform X1.	Nuclear respiratory factor 1.	0.554
Gabpa	Polrmt	ENSDORP00000014021	ENSDORP00000013281	GA-binding protein alpha chain isoform X1.	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.	0.492
Gabpa	Tfam	ENSDORP00000014021	ENSDORP00000013173	GA-binding protein alpha chain isoform X1.	Transcription factor A, mitochondrial.	0.691
Gabpb1	Gabpa	ENSDORP00000015480	ENSDORP00000014021	GA-binding protein subunit beta-1 isoform X3.	GA-binding protein alpha chain isoform X1.	0.989
Gabpb1	Nrf1	ENSDORP00000015480	ENSDORP00000018876	GA-binding protein subunit beta-1 isoform X3.	Nuclear respiratory factor 1.	0.502
Gabpb1	Polrmt	ENSDORP00000015480	ENSDORP00000013281	GA-binding protein subunit beta-1 isoform X3.	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.	0.641
Gabpb1	Tfam	ENSDORP00000015480	ENSDORP00000013173	GA-binding protein subunit beta-1 isoform X3.	Transcription factor A, mitochondrial.	0.661
Gabpb1	Tfb2m	ENSDORP00000015480	ENSDORP00000021697	GA-binding protein subunit beta-1 isoform X3.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.505
Nrf1	Gabpa	ENSDORP00000018876	ENSDORP00000014021	Nuclear respiratory factor 1.	GA-binding protein alpha chain isoform X1.	0.554
Nrf1	Gabpb1	ENSDORP00000018876	ENSDORP00000015480	Nuclear respiratory factor 1.	GA-binding protein subunit beta-1 isoform X3.	0.502
Nrf1	Tfam	ENSDORP00000018876	ENSDORP00000013173	Nuclear respiratory factor 1.	Transcription factor A, mitochondrial.	0.681
Nrf1	Tfb2m	ENSDORP00000018876	ENSDORP00000021697	Nuclear respiratory factor 1.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.517
Polrmt	Gabpa	ENSDORP00000013281	ENSDORP00000014021	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.	GA-binding protein alpha chain isoform X1.	0.492
Polrmt	Gabpb1	ENSDORP00000013281	ENSDORP00000015480	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.	GA-binding protein subunit beta-1 isoform X3.	0.641
Polrmt	Tefm	ENSDORP00000013281	ENSDORP00000000328	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.	Transcription elongation factor, mitochondrial.	0.962
Polrmt	Tfam	ENSDORP00000013281	ENSDORP00000013173	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.	Transcription factor A, mitochondrial.	0.989
Polrmt	Tfb2m	ENSDORP00000013281	ENSDORP00000021697	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.992
Tefm	Polrmt	ENSDORP00000000328	ENSDORP00000013281	Transcription elongation factor, mitochondrial.	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.	0.962
Tefm	Tfb2m	ENSDORP00000000328	ENSDORP00000021697	Transcription elongation factor, mitochondrial.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.541