14 items (Dipodomys ordii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Id3	DNA-binding protein inhibitor ID-3. (119 aa)
	Mef2d	Myocyte-specific enhancer factor 2D. (513 aa)
	Id1	DNA-binding protein inhibitor ID-1. (183 aa)
	Tcf4	Transcription factor 4 isoform X1. (671 aa)
	Id2	DNA-binding protein inhibitor ID-2. (116 aa)
	Mef2a	Myocyte-specific enhancer factor 2A isoform X2. (496 aa)
	Myf6	Myogenic factor 6. (242 aa)
	Myf5	Myogenic factor; Induces fibroblasts to differentiate into myoblasts. Acts as a transcriptional activator that promotes transcription of muscle- specific target genes and plays a role in muscle differentiation. (255 aa)
	Mef2c	Myocyte-specific enhancer factor 2C isoform X5. (483 aa)
	Myog	Myogenin. (224 aa)
	Myod1	Myogenic factor; Induces fibroblasts to differentiate into myoblasts. Acts as a transcriptional activator that promotes transcription of muscle- specific target genes and plays a role in muscle differentiation. (325 aa)
	LOC105994685	Myocyte-specific enhancer factor 2B-like. (241 aa)
	Id4	DNA-binding protein inhibitor ID-4. (161 aa)
	Tcf12	Transcription factor 12 isoform X1. (703 aa)

Your Current Organism:

Dipodomys ordii

NCBI taxonomy Id: 10020
Other names: D. ordii

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Id1	Id2	ENSDORP00000008389	ENSDORP00000013936	DNA-binding protein inhibitor ID-1.	DNA-binding protein inhibitor ID-2.	0.875
Id1	Id3	ENSDORP00000008389	ENSDORP00000005806	DNA-binding protein inhibitor ID-1.	DNA-binding protein inhibitor ID-3.	0.909
Id1	Id4	ENSDORP00000008389	ENSDORP00000024951	DNA-binding protein inhibitor ID-1.	DNA-binding protein inhibitor ID-4.	0.824
Id1	Myf5	ENSDORP00000008389	ENSDORP00000014528	DNA-binding protein inhibitor ID-1.	Myogenic factor; Induces fibroblasts to differentiate into myoblasts. Acts as a transcriptional activator that promotes transcription of muscle- specific target genes and plays a role in muscle differentiation.	0.736
Id1	Myod1	ENSDORP00000008389	ENSDORP00000023729	DNA-binding protein inhibitor ID-1.	Myogenic factor; Induces fibroblasts to differentiate into myoblasts. Acts as a transcriptional activator that promotes transcription of muscle- specific target genes and plays a role in muscle differentiation.	0.901
Id1	Myog	ENSDORP00000008389	ENSDORP00000019834	DNA-binding protein inhibitor ID-1.	Myogenin.	0.469
Id1	Tcf12	ENSDORP00000008389	ENSDORP00000025143	DNA-binding protein inhibitor ID-1.	Transcription factor 12 isoform X1.	0.876
Id1	Tcf4	ENSDORP00000008389	ENSDORP00000011941	DNA-binding protein inhibitor ID-1.	Transcription factor 4 isoform X1.	0.876
Id2	Id1	ENSDORP00000013936	ENSDORP00000008389	DNA-binding protein inhibitor ID-2.	DNA-binding protein inhibitor ID-1.	0.875
Id2	Id3	ENSDORP00000013936	ENSDORP00000005806	DNA-binding protein inhibitor ID-2.	DNA-binding protein inhibitor ID-3.	0.898
Id2	Id4	ENSDORP00000013936	ENSDORP00000024951	DNA-binding protein inhibitor ID-2.	DNA-binding protein inhibitor ID-4.	0.730
Id2	Myf5	ENSDORP00000013936	ENSDORP00000014528	DNA-binding protein inhibitor ID-2.	Myogenic factor; Induces fibroblasts to differentiate into myoblasts. Acts as a transcriptional activator that promotes transcription of muscle- specific target genes and plays a role in muscle differentiation.	0.415
Id2	Myod1	ENSDORP00000013936	ENSDORP00000023729	DNA-binding protein inhibitor ID-2.	Myogenic factor; Induces fibroblasts to differentiate into myoblasts. Acts as a transcriptional activator that promotes transcription of muscle- specific target genes and plays a role in muscle differentiation.	0.514
Id2	Myog	ENSDORP00000013936	ENSDORP00000019834	DNA-binding protein inhibitor ID-2.	Myogenin.	0.659
Id2	Tcf12	ENSDORP00000013936	ENSDORP00000025143	DNA-binding protein inhibitor ID-2.	Transcription factor 12 isoform X1.	0.770
Id2	Tcf4	ENSDORP00000013936	ENSDORP00000011941	DNA-binding protein inhibitor ID-2.	Transcription factor 4 isoform X1.	0.770
Id3	Id1	ENSDORP00000005806	ENSDORP00000008389	DNA-binding protein inhibitor ID-3.	DNA-binding protein inhibitor ID-1.	0.909
Id3	Id2	ENSDORP00000005806	ENSDORP00000013936	DNA-binding protein inhibitor ID-3.	DNA-binding protein inhibitor ID-2.	0.898
Id3	Id4	ENSDORP00000005806	ENSDORP00000024951	DNA-binding protein inhibitor ID-3.	DNA-binding protein inhibitor ID-4.	0.828
Id3	Tcf12	ENSDORP00000005806	ENSDORP00000025143	DNA-binding protein inhibitor ID-3.	Transcription factor 12 isoform X1.	0.689