(19 nodes) Mixed, incl. Formation of the Editosome, and Taxilin family network (Dipodomys ordii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Txlnb	Beta-taxilin. (675 aa)
	Tmem205	Transmembrane protein 205. (189 aa)
	Apobec2	Probable C->U-editing enzyme APOBEC-2. (229 aa)
	Apobec4	Putative C->U-editing enzyme APOBEC-4. (350 aa)
	Sertm1	Serine-rich and transmembrane domain-containing protein 1. (107 aa)
	Tmem14a	Transmembrane protein 14A isoform X2. (86 aa)
	Akap17b	A-kinase anchor protein 17B-like. (910 aa)
	Txlna	Alpha-taxilin. (557 aa)
	Tmem164	Transmembrane protein 164 isoform X1. (148 aa)
	1110065P20Rik	Uncharacterized protein C1orf122 homolog isoform X1. (158 aa)
	Txlng	Gamma-taxilin isoform X1. (522 aa)
	Apobec1	C->U-editing enzyme APOBEC-1. (213 aa)
	Olfr286	Olfactory receptor 10AD1-like. (312 aa)
	A1cf	APOBEC1 complementation factor isoform X2. (122 aa)
	LOC105996908	Olfactory receptor. (316 aa)
	LOC105996920	Olfactory receptor. (312 aa)
	Mroh4	Maestro heat-like repeat family member 5. (983 aa)
	LOC105987449	Olfactory receptor. (313 aa)
	Caap1	Caspase activity and apoptosis inhibitor 1. (352 aa)

Your Current Organism:

Dipodomys ordii

NCBI taxonomy Id: 10020
Other names: D. ordii

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
1110065P20Rik	Txlnb	ENSDORP00000020456	ENSDORP00000001523	Uncharacterized protein C1orf122 homolog isoform X1.	Beta-taxilin.	0.603
A1cf	Apobec1	ENSDORP00000023064	ENSDORP00000021895	APOBEC1 complementation factor isoform X2.	C->U-editing enzyme APOBEC-1.	0.874
A1cf	Apobec2	ENSDORP00000023064	ENSDORP00000006036	APOBEC1 complementation factor isoform X2.	Probable C->U-editing enzyme APOBEC-2.	0.775
A1cf	Apobec4	ENSDORP00000023064	ENSDORP00000006879	APOBEC1 complementation factor isoform X2.	Putative C->U-editing enzyme APOBEC-4.	0.784
Akap17b	Caap1	ENSDORP00000015720	ENSDORP00000027678	A-kinase anchor protein 17B-like.	Caspase activity and apoptosis inhibitor 1.	0.631
Akap17b	Mroh4	ENSDORP00000015720	ENSDORP00000024702	A-kinase anchor protein 17B-like.	Maestro heat-like repeat family member 5.	0.457
Akap17b	Txlng	ENSDORP00000015720	ENSDORP00000021410	A-kinase anchor protein 17B-like.	Gamma-taxilin isoform X1.	0.538
Apobec1	A1cf	ENSDORP00000021895	ENSDORP00000023064	C->U-editing enzyme APOBEC-1.	APOBEC1 complementation factor isoform X2.	0.874
Apobec1	Apobec2	ENSDORP00000021895	ENSDORP00000006036	C->U-editing enzyme APOBEC-1.	Probable C->U-editing enzyme APOBEC-2.	0.683
Apobec1	Apobec4	ENSDORP00000021895	ENSDORP00000006879	C->U-editing enzyme APOBEC-1.	Putative C->U-editing enzyme APOBEC-4.	0.802
Apobec2	A1cf	ENSDORP00000006036	ENSDORP00000023064	Probable C->U-editing enzyme APOBEC-2.	APOBEC1 complementation factor isoform X2.	0.775
Apobec2	Apobec1	ENSDORP00000006036	ENSDORP00000021895	Probable C->U-editing enzyme APOBEC-2.	C->U-editing enzyme APOBEC-1.	0.683
Apobec2	Apobec4	ENSDORP00000006036	ENSDORP00000006879	Probable C->U-editing enzyme APOBEC-2.	Putative C->U-editing enzyme APOBEC-4.	0.804
Apobec2	Txlnb	ENSDORP00000006036	ENSDORP00000001523	Probable C->U-editing enzyme APOBEC-2.	Beta-taxilin.	0.405
Apobec4	A1cf	ENSDORP00000006879	ENSDORP00000023064	Putative C->U-editing enzyme APOBEC-4.	APOBEC1 complementation factor isoform X2.	0.784
Apobec4	Apobec1	ENSDORP00000006879	ENSDORP00000021895	Putative C->U-editing enzyme APOBEC-4.	C->U-editing enzyme APOBEC-1.	0.802
Apobec4	Apobec2	ENSDORP00000006879	ENSDORP00000006036	Putative C->U-editing enzyme APOBEC-4.	Probable C->U-editing enzyme APOBEC-2.	0.804
Caap1	Akap17b	ENSDORP00000027678	ENSDORP00000015720	Caspase activity and apoptosis inhibitor 1.	A-kinase anchor protein 17B-like.	0.631
Mroh4	Akap17b	ENSDORP00000024702	ENSDORP00000015720	Maestro heat-like repeat family member 5.	A-kinase anchor protein 17B-like.	0.457
Sertm1	Tmem14a	ENSDORP00000008284	ENSDORP00000011677	Serine-rich and transmembrane domain-containing protein 1.	Transmembrane protein 14A isoform X2.	0.538