13 items (Dipodomys ordii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSDORP00000021793	annotation not available (71 aa)
	Cdk7	Cyclin-dependent kinase 7. (243 aa)
	Gtf2h2	General transcription factor II H, polypeptide 2. (356 aa)
	Ercc2	TFIIH basal transcription factor complex helicase XPD subunit isoform X1. (764 aa)
	ENSDORP00000004761	annotation not available (64 aa)
	Ccnh	cyclin-H isoform X1; Belongs to the cyclin family. (323 aa)
	Gtf2h1	General transcription factor IIH subunit 1 isoform X2. (552 aa)
	Ercc3	TFIIH basal transcription factor complex helicase XPB subunit isoform X2. (779 aa)
	Gtf2h5	General transcription factor IIH subunit 5. (71 aa)
	Gtf2h3	General transcription factor IIH subunit 3 isoform X1. (309 aa)
	ENSDORP00000027189	annotation not available (164 aa)
	Mnat1	CDK-activating kinase assembly factor MAT1. (281 aa)
	ENSDORP00000024466	annotation not available (547 aa)

Your Current Organism:

Dipodomys ordii

NCBI taxonomy Id: 10020
Other names: D. ordii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ccnh	Cdk7	ENSDORP00000001341	ENSDORP00000019533	cyclin-H isoform X1; Belongs to the cyclin family.	Cyclin-dependent kinase 7.	0.999
Ccnh	ENSDORP00000004761	ENSDORP00000001341	ENSDORP00000004761	cyclin-H isoform X1; Belongs to the cyclin family.	annotation not available	0.958
Ccnh	ENSDORP00000021793	ENSDORP00000001341	ENSDORP00000021793	cyclin-H isoform X1; Belongs to the cyclin family.	annotation not available	0.958
Ccnh	ENSDORP00000024466	ENSDORP00000001341	ENSDORP00000024466	cyclin-H isoform X1; Belongs to the cyclin family.	annotation not available	0.983
Ccnh	ENSDORP00000027189	ENSDORP00000001341	ENSDORP00000027189	cyclin-H isoform X1; Belongs to the cyclin family.	annotation not available	0.989
Ccnh	Ercc2	ENSDORP00000001341	ENSDORP00000007507	cyclin-H isoform X1; Belongs to the cyclin family.	TFIIH basal transcription factor complex helicase XPD subunit isoform X1.	0.996
Ccnh	Ercc3	ENSDORP00000001341	ENSDORP00000004371	cyclin-H isoform X1; Belongs to the cyclin family.	TFIIH basal transcription factor complex helicase XPB subunit isoform X2.	0.993
Ccnh	Gtf2h1	ENSDORP00000001341	ENSDORP00000003869	cyclin-H isoform X1; Belongs to the cyclin family.	General transcription factor IIH subunit 1 isoform X2.	0.989
Ccnh	Gtf2h2	ENSDORP00000001341	ENSDORP00000017338	cyclin-H isoform X1; Belongs to the cyclin family.	General transcription factor II H, polypeptide 2.	0.989
Ccnh	Gtf2h3	ENSDORP00000001341	ENSDORP00000018800	cyclin-H isoform X1; Belongs to the cyclin family.	General transcription factor IIH subunit 3 isoform X1.	0.998
Ccnh	Gtf2h5	ENSDORP00000001341	ENSDORP00000017905	cyclin-H isoform X1; Belongs to the cyclin family.	General transcription factor IIH subunit 5.	0.972
Ccnh	Mnat1	ENSDORP00000001341	ENSDORP00000024744	cyclin-H isoform X1; Belongs to the cyclin family.	CDK-activating kinase assembly factor MAT1.	0.999
Cdk7	Ccnh	ENSDORP00000019533	ENSDORP00000001341	Cyclin-dependent kinase 7.	cyclin-H isoform X1; Belongs to the cyclin family.	0.999
Cdk7	ENSDORP00000004761	ENSDORP00000019533	ENSDORP00000004761	Cyclin-dependent kinase 7.	annotation not available	0.962
Cdk7	ENSDORP00000021793	ENSDORP00000019533	ENSDORP00000021793	Cyclin-dependent kinase 7.	annotation not available	0.962
Cdk7	ENSDORP00000024466	ENSDORP00000019533	ENSDORP00000024466	Cyclin-dependent kinase 7.	annotation not available	0.976
Cdk7	ENSDORP00000027189	ENSDORP00000019533	ENSDORP00000027189	Cyclin-dependent kinase 7.	annotation not available	0.984
Cdk7	Ercc2	ENSDORP00000019533	ENSDORP00000007507	Cyclin-dependent kinase 7.	TFIIH basal transcription factor complex helicase XPD subunit isoform X1.	0.988
Cdk7	Ercc3	ENSDORP00000019533	ENSDORP00000004371	Cyclin-dependent kinase 7.	TFIIH basal transcription factor complex helicase XPB subunit isoform X2.	0.991
Cdk7	Gtf2h1	ENSDORP00000019533	ENSDORP00000003869	Cyclin-dependent kinase 7.	General transcription factor IIH subunit 1 isoform X2.	0.976