56 items (Dipodomys ordii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Rrp1b	Ribosomal RNA processing protein 1 homolog B isoform X1. (662 aa)
	H1f1	Histone H1.1. (216 aa)
	Tcf7	Transcription factor 7 isoform X10. (344 aa)
	Psip1	PC4 and SFRS1-interacting protein isoform X1. (530 aa)
	Trim24	Transcription intermediary factor 1-alpha. (1007 aa)
	Pou4f2	POU domain protein. (348 aa)
	Hif1a	Hypoxia-inducible factor 1-alpha. (246 aa)
	Exosc10	Exosome component 10. (850 aa)
	Exosc5	Exosome complex component RRP46. (236 aa)
	Setd5	SET domain-containing protein 5. (1391 aa)
	Padi2	Protein-arginine deiminase type-2. (671 aa)
	Smarca4	Transcription activator BRG1. (1513 aa)
	Ogt	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X3. (1050 aa)
	LOC105981197	Little elongation complex subunit 2-like. (392 aa)
	Cecr2	Cat eye syndrome critical region protein 2 isoform X2. (1394 aa)
	Ctr9	RNA polymerase-associated protein CTR9 homolog. (1177 aa)
	Nsmf	NMDA receptor synaptonuclear signaling and neuronal migration factor isoform X1. (487 aa)
	Ttc37	Tetratricopeptide repeat protein 37 isoform X1. (1564 aa)
	Myod1	Myogenic factor; Induces fibroblasts to differentiate into myoblasts. Acts as a transcriptional activator that promotes transcription of muscle- specific target genes and plays a role in muscle differentiation. (325 aa)
	Rnf2	E3 ubiquitin-protein ligase RING2. (336 aa)
	Aff4	AF4/FMR2 family member 4. (122 aa)
	Myc	Myc proto-oncogene protein; Transcription factor that binds DNA in a non-specific manner, yet also specifically recognizes the core sequence 5'-CAC[GA]TG-3'. Activates the transcription of growth-related genes. (435 aa)
	LOC105994671	Chromobox protein homolog 3. (173 aa)
	Polr2a	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1970 aa)
	Ice1	Little elongation complex subunit 1. (236 aa)
	Uhrf1	E3 ubiquitin-protein ligase UHRF1. (764 aa)
	Id2	DNA-binding protein inhibitor ID-2. (116 aa)
	Ppargc1a	Peroxisome proliferator-activated receptor gamma coactivator 1-alpha. (797 aa)
	Ankrd2	Ankyrin repeat domain-containing protein 2 isoform X1. (328 aa)
	Bcas3	Breast carcinoma-amplified sequence 3 isoform X4. (928 aa)
	Ruvbl2	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (463 aa)
	Sp1	Transcription factor Sp1. (786 aa)
	ENSDORP00000016447	annotation not available (183 aa)
	Kmt2e	Histone-lysine N-methyltransferase 2E. (452 aa)
	Vdr	Vitamin D3 receptor. (75 aa)
	Nr1h4	Bile acid receptor isoform X1. (486 aa)
	Trim28	Transcription intermediary factor 1-beta. (834 aa)
	Jak2	Tyrosine-protein kinase. (1037 aa)
	Creb1	Cyclic AMP-responsive element-binding protein 1 isoform X1. (341 aa)
	Pelp1	Proline-, glutamic acid- and leucine-rich protein 1 isoform X2. (1137 aa)
	Hdgfl2	Hepatoma-derived growth factor-related protein 2. (391 aa)
	Exosc3	Exosome complex component RRP40. (275 aa)
	Tcf23	Transcription factor 23. (214 aa)
	ENSDORP00000019608	annotation not available (164 aa)
	Ash2l	set1/Ash2 histone methyltransferase complex subunit ASH2 isoform X2. (628 aa)
	Sirt1	NAD-dependent protein deacetylase sirtuin-1. (646 aa)
	Hsf1	Heat shock factor protein 1. (512 aa)
	ENSDORP00000020585	annotation not available (80 aa)
	Zc3h8	Zinc finger CCCH domain-containing protein 8. (304 aa)
	Wdr61	WD repeat-containing protein 61 isoform X1. (305 aa)
	ENSDORP00000022892	annotation not available (166 aa)
	Alkbh1	Alkylated DNA repair protein alkB homolog 1. (385 aa)
	Prdx1	Peroxiredoxin-1. (199 aa)
	Ell	RNA polymerase II elongation factor ELL. (395 aa)
	Exosc4	Exosome complex component RRP41. (245 aa)
	Cbx2	Chromobox protein homolog 2-like. (513 aa)

Your Current Organism:

Dipodomys ordii

NCBI taxonomy Id: 10020
Other names: D. ordii

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Aff4	Ash2l	ENSDORP00000025259	ENSDORP00000020160	AF4/FMR2 family member 4.	set1/Ash2 histone methyltransferase complex subunit ASH2 isoform X2.	0.682
Aff4	Cecr2	ENSDORP00000025259	ENSDORP00000000714	AF4/FMR2 family member 4.	Cat eye syndrome critical region protein 2 isoform X2.	0.458
Aff4	Ctr9	ENSDORP00000025259	ENSDORP00000000016	AF4/FMR2 family member 4.	RNA polymerase-associated protein CTR9 homolog.	0.542
Aff4	Ell	ENSDORP00000025259	ENSDORP00000008053	AF4/FMR2 family member 4.	RNA polymerase II elongation factor ELL.	0.977
Aff4	Polr2a	ENSDORP00000025259	ENSDORP00000026097	AF4/FMR2 family member 4.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.767
Ankrd2	Sirt1	ENSDORP00000015559	ENSDORP00000020318	Ankyrin repeat domain-containing protein 2 isoform X1.	NAD-dependent protein deacetylase sirtuin-1.	0.509
Ash2l	Aff4	ENSDORP00000020160	ENSDORP00000025259	set1/Ash2 histone methyltransferase complex subunit ASH2 isoform X2.	AF4/FMR2 family member 4.	0.682
Ash2l	Cecr2	ENSDORP00000020160	ENSDORP00000000714	set1/Ash2 histone methyltransferase complex subunit ASH2 isoform X2.	Cat eye syndrome critical region protein 2 isoform X2.	0.656
Ash2l	Ctr9	ENSDORP00000020160	ENSDORP00000000016	set1/Ash2 histone methyltransferase complex subunit ASH2 isoform X2.	RNA polymerase-associated protein CTR9 homolog.	0.475
Ash2l	ENSDORP00000020585	ENSDORP00000020160	ENSDORP00000020585	set1/Ash2 histone methyltransferase complex subunit ASH2 isoform X2.	annotation not available	0.788
Ash2l	Kmt2e	ENSDORP00000020160	ENSDORP00000017519	set1/Ash2 histone methyltransferase complex subunit ASH2 isoform X2.	Histone-lysine N-methyltransferase 2E.	0.778
Ash2l	Ogt	ENSDORP00000020160	ENSDORP00000001353	set1/Ash2 histone methyltransferase complex subunit ASH2 isoform X2.	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X3.	0.499
Ash2l	Polr2a	ENSDORP00000020160	ENSDORP00000026097	set1/Ash2 histone methyltransferase complex subunit ASH2 isoform X2.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.706
Ash2l	Psip1	ENSDORP00000020160	ENSDORP00000004592	set1/Ash2 histone methyltransferase complex subunit ASH2 isoform X2.	PC4 and SFRS1-interacting protein isoform X1.	0.433
Ash2l	Rnf2	ENSDORP00000020160	ENSDORP00000024567	set1/Ash2 histone methyltransferase complex subunit ASH2 isoform X2.	E3 ubiquitin-protein ligase RING2.	0.549
Cbx2	Rnf2	ENSDORP00000007124	ENSDORP00000024567	Chromobox protein homolog 2-like.	E3 ubiquitin-protein ligase RING2.	0.978
Cecr2	Aff4	ENSDORP00000000714	ENSDORP00000025259	Cat eye syndrome critical region protein 2 isoform X2.	AF4/FMR2 family member 4.	0.458
Cecr2	Ash2l	ENSDORP00000000714	ENSDORP00000020160	Cat eye syndrome critical region protein 2 isoform X2.	set1/Ash2 histone methyltransferase complex subunit ASH2 isoform X2.	0.656
Cecr2	Kmt2e	ENSDORP00000000714	ENSDORP00000017519	Cat eye syndrome critical region protein 2 isoform X2.	Histone-lysine N-methyltransferase 2E.	0.639
Cecr2	Myc	ENSDORP00000000714	ENSDORP00000025605	Cat eye syndrome critical region protein 2 isoform X2.	Myc proto-oncogene protein; Transcription factor that binds DNA in a non-specific manner, yet also specifically recognizes the core sequence 5'-CAC[GA]TG-3'. Activates the transcription of growth-related genes.	0.411