20 items (Dipodomys ordii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Gria1	Glutamate receptor 1 isoform X2. (906 aa)
	Grik2	Glutamate receptor ionotropic, kainate 2 isoform X1. (908 aa)
	Grik5	Glutamate receptor ionotropic, kainate 5. (985 aa)
	ENSDORP00000016358	annotation not available (337 aa)
	Grid1	Glutamate receptor ionotropic, delta-1. (982 aa)
	Grik3	Glutamate receptor ionotropic, kainate 3 isoform X1. (919 aa)
	Grin3a	Glutamate receptor ionotropic, NMDA 3A isoform X1. (1134 aa)
	Grid2	Glutamate receptor ionotropic, delta-2 isoform X1. (977 aa)
	Grin2a	Glutamate receptor ionotropic, NMDA 2A. (1301 aa)
	Grik1	Glutamate receptor ionotropic, kainate 1 isoform X1. (926 aa)
	Grik4	Glutamate receptor ionotropic, kainate 4. (765 aa)
	Grin2c	Glutamate receptor ionotropic, NMDA 2C. (1021 aa)
	Gria2	Glutamate receptor 2. (842 aa)
	Gria3	Glutamate receptor 3 isoform X2. (894 aa)
	Grin3b	Glutamate receptor ionotropic, NMDA 3B; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (933 aa)
	Gria4	Glutamate receptor 4. (193 aa)
	Grin1	LOW QUALITY PROTEIN: glutamate receptor ionotropic, NMDA 1. (926 aa)
	Cfap299	Uncharacterized protein C4orf22 homolog. (233 aa)
	Grin2d	Glutamate receptor, ionotropic, NMDA2D (epsilon 4). (1128 aa)
	Grin2b	Glutamate receptor ionotropic, NMDA 2B. (1103 aa)

Your Current Organism:

Dipodomys ordii

NCBI taxonomy Id: 10020
Other names: D. ordii

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cfap299	ENSDORP00000016358	ENSDORP00000000834	ENSDORP00000016358	Uncharacterized protein C4orf22 homolog.	annotation not available	0.471
Cfap299	Gria1	ENSDORP00000000834	ENSDORP00000001966	Uncharacterized protein C4orf22 homolog.	Glutamate receptor 1 isoform X2.	0.456
Cfap299	Gria2	ENSDORP00000000834	ENSDORP00000004118	Uncharacterized protein C4orf22 homolog.	Glutamate receptor 2.	0.456
Cfap299	Gria3	ENSDORP00000000834	ENSDORP00000003261	Uncharacterized protein C4orf22 homolog.	Glutamate receptor 3 isoform X2.	0.456
Cfap299	Gria4	ENSDORP00000000834	ENSDORP00000023764	Uncharacterized protein C4orf22 homolog.	Glutamate receptor 4.	0.456
Cfap299	Grid1	ENSDORP00000000834	ENSDORP00000011570	Uncharacterized protein C4orf22 homolog.	Glutamate receptor ionotropic, delta-1.	0.485
Cfap299	Grid2	ENSDORP00000000834	ENSDORP00000011007	Uncharacterized protein C4orf22 homolog.	Glutamate receptor ionotropic, delta-2 isoform X1.	0.485
Cfap299	Grin1	ENSDORP00000000834	ENSDORP00000022623	Uncharacterized protein C4orf22 homolog.	LOW QUALITY PROTEIN: glutamate receptor ionotropic, NMDA 1.	0.627
Cfap299	Grin2a	ENSDORP00000000834	ENSDORP00000010822	Uncharacterized protein C4orf22 homolog.	Glutamate receptor ionotropic, NMDA 2A.	0.471
Cfap299	Grin2b	ENSDORP00000000834	ENSDORP00000001455	Uncharacterized protein C4orf22 homolog.	Glutamate receptor ionotropic, NMDA 2B.	0.471
Cfap299	Grin2c	ENSDORP00000000834	ENSDORP00000004973	Uncharacterized protein C4orf22 homolog.	Glutamate receptor ionotropic, NMDA 2C.	0.471
Cfap299	Grin2d	ENSDORP00000000834	ENSDORP00000021849	Uncharacterized protein C4orf22 homolog.	Glutamate receptor, ionotropic, NMDA2D (epsilon 4).	0.471
Cfap299	Grin3a	ENSDORP00000000834	ENSDORP00000011253	Uncharacterized protein C4orf22 homolog.	Glutamate receptor ionotropic, NMDA 3A isoform X1.	0.508
Cfap299	Grin3b	ENSDORP00000000834	ENSDORP00000026203	Uncharacterized protein C4orf22 homolog.	Glutamate receptor ionotropic, NMDA 3B; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.402
ENSDORP00000016358	Cfap299	ENSDORP00000016358	ENSDORP00000000834	annotation not available	Uncharacterized protein C4orf22 homolog.	0.471
ENSDORP00000016358	Gria1	ENSDORP00000016358	ENSDORP00000001966	annotation not available	Glutamate receptor 1 isoform X2.	0.736
ENSDORP00000016358	Gria2	ENSDORP00000016358	ENSDORP00000004118	annotation not available	Glutamate receptor 2.	0.717
ENSDORP00000016358	Gria3	ENSDORP00000016358	ENSDORP00000003261	annotation not available	Glutamate receptor 3 isoform X2.	0.511
ENSDORP00000016358	Gria4	ENSDORP00000016358	ENSDORP00000023764	annotation not available	Glutamate receptor 4.	0.478
ENSDORP00000016358	Grid1	ENSDORP00000016358	ENSDORP00000011570	annotation not available	Glutamate receptor ionotropic, delta-1.	0.670