24 items (Dipodomys ordii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Itga2	Integrin alpha-2; Belongs to the integrin alpha chain family. (1167 aa)
	Tbxa2r	Cactin-like. (354 aa)
	Ada	Adenosine deaminase isoform X2. (373 aa)
	Adra1a	alpha-1A adrenergic receptor isoform X1. (467 aa)
	Edn2	Endothelin-2 isoform X1. (178 aa)
	Kit	Mast/stem cell growth factor receptor; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (976 aa)
	Oxtr	Oxytocin receptor; Receptor for oxytocin. The activity of this receptor is mediated by G proteins which activate a phosphatidylinositol-calcium second messenger system; Belongs to the G-protein coupled receptor 1 family. Vasopressin/oxytocin receptor subfamily. (375 aa)
	Chrm3	Muscarinic acetylcholine receptor; The muscarinic acetylcholine receptor mediates various cellular responses, including inhibition of adenylate cyclase, breakdown of phosphoinositides and modulation of potassium channels through the action of G proteins. (590 aa)
	Ghsr	Growth hormone secretagogue receptor type 1; Belongs to the G-protein coupled receptor 1 family. (366 aa)
	Ptger3	Prostaglandin E2 receptor EP3 subtype. (390 aa)
	Ghrl	Appetite-regulating hormone isoform X1. (125 aa)
	Sphk1	Sphingosine kinase 1. (372 aa)
	Npnt	Nephronectin isoform X1. (569 aa)
	Abat	4-aminobutyrate aminotransferase, mitochondrial; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (500 aa)
	F2r	Proteinase-activated receptor 1; Belongs to the G-protein coupled receptor 1 family. (428 aa)
	Pawr	PRKC apoptosis WT1 regulator protein. (342 aa)
	ENSDORP00000023352	annotation not available (88 aa)
	Oxt	Oxytocin-neurophysin 1; Belongs to the vasopressin/oxytocin family. (125 aa)
	Ptgs1	Prostaglandin G/H synthase 1. (600 aa)
	Gper1	G-protein coupled estrogen receptor 1; Belongs to the G-protein coupled receptor 1 family. (375 aa)
	Edn1	Endothelin-1-like isoform X1. (202 aa)
	Cttn	Src substrate cortactin isoform X1. (550 aa)
	Srf	Serum response factor. (508 aa)
	Myocd	Myocardin. (923 aa)

Your Current Organism:

Dipodomys ordii

NCBI taxonomy Id: 10020
Other names: D. ordii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Adra1a	Edn1	ENSDORP00000005411	ENSDORP00000025107	alpha-1A adrenergic receptor isoform X1.	Endothelin-1-like isoform X1.	0.794
Adra1a	Ghrl	ENSDORP00000005411	ENSDORP00000016156	alpha-1A adrenergic receptor isoform X1.	Appetite-regulating hormone isoform X1.	0.508
Adra1a	Tbxa2r	ENSDORP00000005411	ENSDORP00000003823	alpha-1A adrenergic receptor isoform X1.	Cactin-like.	0.584
Chrm3	Edn1	ENSDORP00000011299	ENSDORP00000025107	Muscarinic acetylcholine receptor; The muscarinic acetylcholine receptor mediates various cellular responses, including inhibition of adenylate cyclase, breakdown of phosphoinositides and modulation of potassium channels through the action of G proteins.	Endothelin-1-like isoform X1.	0.685
Chrm3	Ghrl	ENSDORP00000011299	ENSDORP00000016156	Muscarinic acetylcholine receptor; The muscarinic acetylcholine receptor mediates various cellular responses, including inhibition of adenylate cyclase, breakdown of phosphoinositides and modulation of potassium channels through the action of G proteins.	Appetite-regulating hormone isoform X1.	0.686
Chrm3	Oxt	ENSDORP00000011299	ENSDORP00000023426	Muscarinic acetylcholine receptor; The muscarinic acetylcholine receptor mediates various cellular responses, including inhibition of adenylate cyclase, breakdown of phosphoinositides and modulation of potassium channels through the action of G proteins.	Oxytocin-neurophysin 1; Belongs to the vasopressin/oxytocin family.	0.542
Edn1	Adra1a	ENSDORP00000025107	ENSDORP00000005411	Endothelin-1-like isoform X1.	alpha-1A adrenergic receptor isoform X1.	0.794
Edn1	Chrm3	ENSDORP00000025107	ENSDORP00000011299	Endothelin-1-like isoform X1.	Muscarinic acetylcholine receptor; The muscarinic acetylcholine receptor mediates various cellular responses, including inhibition of adenylate cyclase, breakdown of phosphoinositides and modulation of potassium channels through the action of G proteins.	0.685
Edn1	Edn2	ENSDORP00000025107	ENSDORP00000005684	Endothelin-1-like isoform X1.	Endothelin-2 isoform X1.	0.870
Edn1	F2r	ENSDORP00000025107	ENSDORP00000022717	Endothelin-1-like isoform X1.	Proteinase-activated receptor 1; Belongs to the G-protein coupled receptor 1 family.	0.464
Edn1	Ghrl	ENSDORP00000025107	ENSDORP00000016156	Endothelin-1-like isoform X1.	Appetite-regulating hormone isoform X1.	0.503
Edn1	Ghsr	ENSDORP00000025107	ENSDORP00000012498	Endothelin-1-like isoform X1.	Growth hormone secretagogue receptor type 1; Belongs to the G-protein coupled receptor 1 family.	0.925
Edn1	Oxt	ENSDORP00000025107	ENSDORP00000023426	Endothelin-1-like isoform X1.	Oxytocin-neurophysin 1; Belongs to the vasopressin/oxytocin family.	0.462
Edn1	Oxtr	ENSDORP00000025107	ENSDORP00000007227	Endothelin-1-like isoform X1.	Oxytocin receptor; Receptor for oxytocin. The activity of this receptor is mediated by G proteins which activate a phosphatidylinositol-calcium second messenger system; Belongs to the G-protein coupled receptor 1 family. Vasopressin/oxytocin receptor subfamily.	0.930
Edn1	Ptger3	ENSDORP00000025107	ENSDORP00000015383	Endothelin-1-like isoform X1.	Prostaglandin E2 receptor EP3 subtype.	0.901
Edn1	Tbxa2r	ENSDORP00000025107	ENSDORP00000003823	Endothelin-1-like isoform X1.	Cactin-like.	0.464
Edn2	Edn1	ENSDORP00000005684	ENSDORP00000025107	Endothelin-2 isoform X1.	Endothelin-1-like isoform X1.	0.870
Edn2	Oxt	ENSDORP00000005684	ENSDORP00000023426	Endothelin-2 isoform X1.	Oxytocin-neurophysin 1; Belongs to the vasopressin/oxytocin family.	0.450
Edn2	Oxtr	ENSDORP00000005684	ENSDORP00000007227	Endothelin-2 isoform X1.	Oxytocin receptor; Receptor for oxytocin. The activity of this receptor is mediated by G proteins which activate a phosphatidylinositol-calcium second messenger system; Belongs to the G-protein coupled receptor 1 family. Vasopressin/oxytocin receptor subfamily.	0.771
F2r	Edn1	ENSDORP00000022717	ENSDORP00000025107	Proteinase-activated receptor 1; Belongs to the G-protein coupled receptor 1 family.	Endothelin-1-like isoform X1.	0.464