45 items (Dipodomys ordii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Slit2	Slit homolog 2 protein. (1344 aa)
	Edn1	Endothelin-1-like isoform X1. (202 aa)
	Sema3f	semaphorin-3F isoform X1; Belongs to the semaphorin family. (785 aa)
	ENSDORP00000027128	annotation not available (119 aa)
	Edn3	Endothelin-3. (206 aa)
	Lhx2	LIM/homeobox protein Lhx2 isoform X1. (406 aa)
	Ulk1	Serine/threonine-protein kinase ULK1. (1012 aa)
	Slit1	Slit homolog 1 protein isoform X1. (1535 aa)
	Sema5a	semaphorin-5A. (1074 aa)
	Dclk1	Serine/threonine-protein kinase DCLK1 isoform X1. (755 aa)
	Map1b	Microtubule associated protein 1B. (236 aa)
	Slit3	Slit homolog 3 protein. (1257 aa)
	Limk1	LIM domain kinase 1. (635 aa)
	Cdh4	Cadherin-4; Cadherins are calcium-dependent cell adhesion proteins. (899 aa)
	Sema7a	semaphorin-7A; Belongs to the semaphorin family. (643 aa)
	Plxna3	plexin-A3. (1849 aa)
	Srf	Serum response factor. (508 aa)
	Nrp1	Neuropilin; Belongs to the neuropilin family. (735 aa)
	Pou4f3	POU domain protein. (339 aa)
	Pou4f2	POU domain protein. (348 aa)
	Smo	Smoothened homolog; Belongs to the G-protein coupled receptor Fz/Smo family. (788 aa)
	Hsp90aa1	Heat shock protein HSP 90-alpha. (733 aa)
	Edn2	Endothelin-2 isoform X1. (178 aa)
	Auts2	Autism susceptibility gene 2 protein. (592 aa)
	C9orf72	Protein C9orf72 homolog. (481 aa)
	Nlgn3	Neuroligin-3 isoform X1. (848 aa)
	Lamb2	Laminin subunit beta-2. (1800 aa)
	Raph1	Ras-associated and pleckstrin homology domains-containing protein 1. (668 aa)
	Itgb1	Integrin beta; Belongs to the integrin beta chain family. (798 aa)
	Slc9a6	Sodium/hydrogen exchanger; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family. (663 aa)
	Spg11	Spatacsin isoform X1. (2441 aa)
	Alcam	CD166 antigen isoform X1. (583 aa)
	Mapt	Microtubule-associated protein. (748 aa)
	Hsp90ab1	Heat shock protein HSP 90-beta. (723 aa)
	Dcx	Neuronal migration protein doublecortin isoform X1. (365 aa)
	Cyfip1	Cytoplasmic FMR1-interacting protein; Belongs to the CYFIP family. (1253 aa)
	Ulk2	Serine/threonine-protein kinase ULK2 isoform X1. (1036 aa)
	Vcl	Vinculin isoform X2. (1135 aa)
	Sema5b	semaphorin-5B isoform X1. (1120 aa)
	Ryk	Tyrosine-protein kinase RYK isoform X1. (475 aa)
	Ednra	Endothelin-1 receptor; Belongs to the G-protein coupled receptor 1 family. (426 aa)
	Sema3a	semaphorin-3A; Belongs to the semaphorin family. (772 aa)
	Tnr	tenascin-R. (1361 aa)
	Usp9x	Probable ubiquitin carboxyl-terminal hydrolase FAF-X; Belongs to the peptidase C19 family. (2317 aa)
	Rnf6	E3 ubiquitin-protein ligase RNF6. (683 aa)

Your Current Organism:

Dipodomys ordii

NCBI taxonomy Id: 10020
Other names: D. ordii

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Alcam	Itgb1	ENSDORP00000009246	ENSDORP00000007294	CD166 antigen isoform X1.	Integrin beta; Belongs to the integrin beta chain family.	0.566
Auts2	ENSDORP00000027128	ENSDORP00000005740	ENSDORP00000027128	Autism susceptibility gene 2 protein.	annotation not available	0.896
C9orf72	Mapt	ENSDORP00000006309	ENSDORP00000009734	Protein C9orf72 homolog.	Microtubule-associated protein.	0.537
C9orf72	Ulk1	ENSDORP00000006309	ENSDORP00000019213	Protein C9orf72 homolog.	Serine/threonine-protein kinase ULK1.	0.963
C9orf72	Ulk2	ENSDORP00000006309	ENSDORP00000012098	Protein C9orf72 homolog.	Serine/threonine-protein kinase ULK2 isoform X1.	0.941
Cdh4	Vcl	ENSDORP00000000192	ENSDORP00000012116	Cadherin-4; Cadherins are calcium-dependent cell adhesion proteins.	Vinculin isoform X2.	0.675
Cyfip1	Hsp90aa1	ENSDORP00000012005	ENSDORP00000005210	Cytoplasmic FMR1-interacting protein; Belongs to the CYFIP family.	Heat shock protein HSP 90-alpha.	0.427
Cyfip1	Hsp90ab1	ENSDORP00000012005	ENSDORP00000010323	Cytoplasmic FMR1-interacting protein; Belongs to the CYFIP family.	Heat shock protein HSP 90-beta.	0.427
Cyfip1	Limk1	ENSDORP00000012005	ENSDORP00000000136	Cytoplasmic FMR1-interacting protein; Belongs to the CYFIP family.	LIM domain kinase 1.	0.405
Cyfip1	Map1b	ENSDORP00000012005	ENSDORP00000021710	Cytoplasmic FMR1-interacting protein; Belongs to the CYFIP family.	Microtubule associated protein 1B.	0.445
Cyfip1	Nlgn3	ENSDORP00000012005	ENSDORP00000006844	Cytoplasmic FMR1-interacting protein; Belongs to the CYFIP family.	Neuroligin-3 isoform X1.	0.428
Dclk1	Dcx	ENSDORP00000021448	ENSDORP00000010970	Serine/threonine-protein kinase DCLK1 isoform X1.	Neuronal migration protein doublecortin isoform X1.	0.900
Dcx	Dclk1	ENSDORP00000010970	ENSDORP00000021448	Neuronal migration protein doublecortin isoform X1.	Serine/threonine-protein kinase DCLK1 isoform X1.	0.900
ENSDORP00000027128	Auts2	ENSDORP00000027128	ENSDORP00000005740	annotation not available	Autism susceptibility gene 2 protein.	0.896
Edn1	Edn2	ENSDORP00000025107	ENSDORP00000005684	Endothelin-1-like isoform X1.	Endothelin-2 isoform X1.	0.870
Edn1	Edn3	ENSDORP00000025107	ENSDORP00000017904	Endothelin-1-like isoform X1.	Endothelin-3.	0.896
Edn1	Ednra	ENSDORP00000025107	ENSDORP00000013455	Endothelin-1-like isoform X1.	Endothelin-1 receptor; Belongs to the G-protein coupled receptor 1 family.	0.996
Edn2	Edn1	ENSDORP00000005684	ENSDORP00000025107	Endothelin-2 isoform X1.	Endothelin-1-like isoform X1.	0.870
Edn2	Edn3	ENSDORP00000005684	ENSDORP00000017904	Endothelin-2 isoform X1.	Endothelin-3.	0.866
Edn2	Ednra	ENSDORP00000005684	ENSDORP00000013455	Endothelin-2 isoform X1.	Endothelin-1 receptor; Belongs to the G-protein coupled receptor 1 family.	0.928