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Zc3h14 Zc3h14 Zcchc6 Zcchc6 Dhx34 Dhx34 Rock2 Rock2 Exosc9 Exosc9 Tardbp Tardbp Hnrnpr Hnrnpr Rc3h2 Rc3h2 Pkp1 Pkp1 Dicer1 Dicer1 Rnasel Rnasel Cpeb3 Cpeb3 Myd88 Myd88 Rc3h1 Rc3h1 Vim Vim Calcr Calcr Pde12 Pde12 Traf2 Traf2 Mtor Mtor Exosc5 Exosc5 Tnrc6b Tnrc6b Brf1 Brf1 Larp1 Larp1 Ythdf1 Ythdf1 Mettl3 Mettl3 Cnot1 Cnot1 Pum1 Pum1 Apex1 Apex1 Dcp1a Dcp1a Igf2bp2 Igf2bp2 Noct Noct Angel2 Angel2 Dcps Dcps Mov10 Mov10 Pcbp4 Pcbp4 Eif4enif1 Eif4enif1 Tent4b Tent4b Rbm10 Rbm10 Upf1 Upf1 Dhx36 Dhx36 Khsrp Khsrp ENSDORP00000026485 ENSDORP00000026485 Cnot2 Cnot2 Tut4 Tut4 Ythdf3 Ythdf3 ENSDORP00000025971 ENSDORP00000025971 Cnot7 Cnot7 Lsm1 Lsm1 Tnrc6c Tnrc6c Prr5l Prr5l Secisbp2 Secisbp2 ENSDORP00000025238 ENSDORP00000025238 Cnot3 Cnot3 Rbm24 Rbm24 Ttc5 Ttc5 Hnrnpd Hnrnpd Carhsp1 Carhsp1 Exosc7 Exosc7 Fastkd5 Fastkd5 Fxr1 Fxr1 Ago3 Ago3 Mlh1 Mlh1 Zc3hav1 Zc3hav1 A1cf A1cf Fastkd1 Fastkd1 Patl2 Patl2 Gigyf2 Gigyf2 Traf5 Traf5 Pkp3 Pkp3 ENSDORP00000022139 ENSDORP00000022139 Zfp36l2 Zfp36l2 ENSDORP00000021953 ENSDORP00000021953 Nanos1 Nanos1 Fastk Fastk Axin2 Axin2 Cnot8 Cnot8 Zc3h12d Zc3h12d Patl1 Patl1 LOC106001311 LOC106001311 Btg2 Btg2 Syncrip Syncrip Parn Parn Celf1 Celf1 Polr2d Polr2d Tent4a Tent4a Cirbp Cirbp Ythdf2 Ythdf2 Slc11a1 Slc11a1 Tnrc6a Tnrc6a Gdnf Gdnf Fastkd3 Fastkd3 Samd4b Samd4b Exosc2 Exosc2 Cnot6 Cnot6 Rbm8a Rbm8a Csdc2 Csdc2 Mettl16 Mettl16 Mapkapk2 Mapkapk2 LOC106002060 LOC106002060 Larp4b Larp4b Hnrnpa0 Hnrnpa0 Zfp36l1 Zfp36l1 Rbm46 Rbm46 Ybx1 Ybx1 Mettl14 Mettl14 Vip Vip Myef2 Myef2 Gtpbp1 Gtpbp1 Polr2g Polr2g Magoh Magoh Tent5b Tent5b Hnrnpu Hnrnpu Rida Rida Srsf1 Srsf1 Pan3 Pan3 Taf15 Taf15 Dnd1 Dnd1 Igf2bp1 Igf2bp1 Exosc3 Exosc3 Meioc Meioc Fxr2 Fxr2 Fus Fus Igf2bp3 Igf2bp3 Tbrg4 Tbrg4 Pabpc1 Pabpc1 Tob1 Tob1 E2f1 E2f1 Plekhn1 Plekhn1 Trim71 Trim71 Zfp36 Zfp36 Thrap3 Thrap3 Dis3l2 Dis3l2 Eif4a3 Eif4a3 Tent5a Tent5a Pan2 Pan2 Ikbke Ikbke Nbas Nbas Elavl4 Elavl4 Zc3h12a Zc3h12a Dhx9 Dhx9 Fmr1 Fmr1 Csde1 Csde1 Pabpc4 Pabpc4 Pnldc1 Pnldc1 Dazl Dazl Cnot6l Cnot6l Pum2 Pum2 Pnpt1 Pnpt1 Fastkd2 Fastkd2 Ago2 Ago2 Exosc8 Exosc8 Hnrnpab Hnrnpab Ybx2 Ybx2 Boll Boll Traf3ip2 Traf3ip2 Tent5c Tent5c Dcp2 Dcp2 Rock1 Rock1 Pcid2 Pcid2 Paip1 Paip1 Samd4 Samd4 Fto Fto Elavl1 Elavl1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Zc3h14Zinc finger CCCH-type containing 14. (680 aa)
Zcchc6Terminal uridylyltransferase 7 isoform X3. (774 aa)
Dhx34LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DHX34. (1140 aa)
Rock2Rho-associated protein kinase 2; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. (1114 aa)
Exosc9Exosome complex component RRP45. (258 aa)
TardbpTAR DNA-binding protein 43 isoform X1. (414 aa)
HnrnprHeterogeneous nuclear ribonucleoprotein R isoform X2. (633 aa)
Rc3h2Roquin-2. (1188 aa)
Pkp1Plakophilin-1. (727 aa)
Dicer1Endoribonuclease Dicer isoform X1; Belongs to the helicase family. Dicer subfamily. (1912 aa)
Rnasel2-5A-dependent ribonuclease isoform X2. (701 aa)
Cpeb3Cytoplasmic polyadenylation element-binding protein 3. (723 aa)
Myd88Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response. (338 aa)
Rc3h1Roquin-1. (1131 aa)
VimVimentin; Belongs to the intermediate filament family. (445 aa)
CalcrCalcitonin receptor isoform X2; Belongs to the G-protein coupled receptor 2 family. (485 aa)
Pde122',5'-phosphodiesterase 12. (609 aa)
Traf2TNF receptor-associated factor. (484 aa)
MtorSerine/threonine-protein kinase mTOR; Belongs to the PI3/PI4-kinase family. (2457 aa)
Exosc5Exosome complex component RRP46. (236 aa)
Tnrc6bTrinucleotide repeat-containing gene 6B protein. (1808 aa)
Brf1Transcription factor IIIB 90 kDa subunit isoform X3. (649 aa)
Larp1La-related protein 1. (935 aa)
Ythdf1YTH domain-containing family protein 1. (573 aa)
Mettl3N6-adenosine-methyltransferase 70 kDa subunit; Belongs to the MT-A70-like family. (576 aa)
Cnot1CCR4-NOT transcription complex subunit 1. (824 aa)
Pum1Pumilio homolog 1 isoform X6. (984 aa)
Apex1DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. (318 aa)
Dcp1amRNA-decapping enzyme 1A isoform X1. (603 aa)
Igf2bp2Insulin-like growth factor 2 mRNA-binding protein 2. (509 aa)
NoctNocturnin. (427 aa)
Angel2Protein angel homolog 2 isoform X1. (544 aa)
Dcpsm7GpppX diphosphatase. (334 aa)
Mov10Putative helicase MOV-10 isoform X2. (1049 aa)
Pcbp4poly(RC)-binding protein 4. (402 aa)
Eif4enif1Eukaryotic translation initiation factor 4E transporter. (815 aa)
Tent4bNon-canonical poly(A) RNA polymerase PAPD5 isoform X1. (542 aa)
Rbm10RNA-binding protein 10 isoform X4. (930 aa)
Upf1Regulator of nonsense transcripts 1. (1106 aa)
Dhx36ATP-dependent RNA helicase DHX36 isoform X1. (981 aa)
KhsrpFar upstream element-binding protein 2. (713 aa)
ENSDORP00000026485annotation not available (165 aa)
Cnot2CCR4-NOT transcription complex subunit 2 isoform X2. (540 aa)
Tut4Terminal uridylyltransferase 4 isoform X4. (1644 aa)
Ythdf3YTH domain-containing family protein 3 isoform X5. (588 aa)
ENSDORP00000025971annotation not available (69 aa)
Cnot7CCR4-NOT transcription complex subunit 7 isoform X2. (285 aa)
Lsm1U6 snRNA-associated Sm-like protein LSm1; Plays a role in the degradation of histone mRNAs, the only eukaryotic mRNAs that are not polyadenylated. Probably also part of an LSm subunits-containing complex involved in the general process of mRNA degradation. (133 aa)
Tnrc6cTrinucleotide repeat-containing gene 6C protein. (1843 aa)
Prr5lProline-rich protein 5-like. (367 aa)
Secisbp2Selenocysteine insertion sequence-binding protein 2 isoform X1. (853 aa)
ENSDORP00000025238annotation not available (136 aa)
Cnot3CCR4-NOT transcription complex subunit 3 isoform X2. (751 aa)
Rbm24RNA-binding protein 24. (236 aa)
Ttc5Tetratricopeptide repeat protein 5 isoform X1. (388 aa)
HnrnpdHeterogeneous nuclear ribonucleoprotein D0. (310 aa)
Carhsp1Calcium-regulated heat stable protein 1. (147 aa)
Exosc7Exosome complex component RRP42. (267 aa)
Fastkd5FAST kinase domain-containing protein 5. (804 aa)
Fxr1Fragile X mental retardation syndrome-related protein 1. (601 aa)
Ago3Protein argonaute-3; Required for RNA-mediated gene silencing (RNAi). Binds to short RNAs such as microRNAs (miRNAs) and represses the translation of mRNAs which are complementary to them. Lacks endonuclease activity and does not appear to cleave target mRNAs. (860 aa)
Mlh1DNA mismatch repair protein Mlh1 isoform X2. (762 aa)
Zc3hav1Zinc finger CCCH-type antiviral protein 1 isoform X1. (961 aa)
A1cfAPOBEC1 complementation factor isoform X2. (122 aa)
Fastkd1FAST kinase domain-containing protein 1. (793 aa)
Patl2Protein PAT1 homolog 2. (504 aa)
Gigyf2PERQ amino acid-rich with GYF domain-containing protein 2. (220 aa)
Traf5TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (558 aa)
Pkp3Plakophilin-3. (723 aa)
ENSDORP00000022139annotation not available (109 aa)
Zfp36l2Zinc finger protein 36, C3H1 type-like 2. (289 aa)
ENSDORP00000021953annotation not available (124 aa)
Nanos1Nanos homolog 1; Belongs to the nanos family. (194 aa)
FastkFas-activated serine/threonine kinase isoform X1. (547 aa)
Axin2Axin-2. (837 aa)
Cnot8CCR4-NOT transcription complex subunit 8 isoform X1. (292 aa)
Zc3h12dProbable ribonuclease ZC3H12D. (311 aa)
Patl1Protein PAT1 homolog 1 isoform X1. (770 aa)
LOC106001311DNA-directed RNA polymerase II subunit RPB7. (172 aa)
Btg2Protein BTG2. (158 aa)
SyncripHeterogeneous nuclear ribonucleoprotein Q isoform X2. (562 aa)
Parnpoly(A)-specific ribonuclease PARN. (203 aa)
Celf1CUGBP Elav-like family member 1. (459 aa)
Polr2dDNA-directed RNA polymerase II subunit RPB4. (142 aa)
Tent4aNon-canonical poly(A) RNA polymerase PAPD7 isoform X1. (542 aa)
CirbpCold-inducible RNA-binding protein isoform X1. (172 aa)
Ythdf2YTH domain-containing family protein 2 isoform X1. (579 aa)
Slc11a1Natural resistance-associated macrophage protein 1 isoform X2. (538 aa)
Tnrc6aTrinucleotide repeat-containing gene 6A protein isoform X3. (629 aa)
GdnfGlial cell line-derived neurotrophic factor isoform X1. (240 aa)
Fastkd3FAST kinase domain-containing protein 3. (663 aa)
Samd4bProtein Smaug homolog 2. (674 aa)
Exosc2Exosome complex component RRP4. (293 aa)
Cnot6CCR4-NOT transcription complex subunit 6 isoform X1. (532 aa)
Rbm8aRNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (174 aa)
Csdc2Cold shock domain-containing protein C2. (153 aa)
Mettl16U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; RNA N6-methyltransferase that methylates adenosine residues of a subset of RNAs and plays a key role in S-adenosyl-L-methionine homeostasis by regulating expression of MAT2A transcripts. Able to N6- methylate a subset of mRNAs and U6 small nuclear RNAs (U6 snRNAs). In contrast to the METTL3-METTL14 heterodimer, only able to methylate a limited number of RNAs: requires both a 5'UACAGAGAA-3' nonamer sequence and a specific RNA structure. In presence of S-adenosyl-L-methionine, binds the 3'-UTR region of MAT2A mRNA and specifical [...] (226 aa)
Mapkapk2MAP kinase-activated protein kinase 2; Belongs to the protein kinase superfamily. (353 aa)
LOC106002060PAB-dependent poly(A)-specific ribonuclease subunit PAN2-like. (344 aa)
Larp4bLa-related protein 4B isoform X1. (732 aa)
Hnrnpa0Heterogeneous nuclear ribonucleoprotein A0. (348 aa)
Zfp36l1Zinc finger protein 36, C3H1 type-like 1. (338 aa)
Rbm46Probable RNA-binding protein 46 isoform X1. (533 aa)
Ybx1Nuclease-sensitive element-binding protein 1. (214 aa)
Mettl14N6-adenosine-methyltransferase subunit METTL14 isoform X3; Belongs to the MT-A70-like family. (456 aa)
VipVIP peptides isoform X1. (170 aa)
Myef2Myelin expression factor 2. (537 aa)
Gtpbp1GTP-binding protein 1 isoform X1. (669 aa)
Polr2gDNA-directed RNA polymerase II subunit RPB7. (118 aa)
MagohProtein mago nashi homolog. (146 aa)
Tent5bProtein FAM46B. (431 aa)
HnrnpuLOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein U. (787 aa)
RidaRibonuclease UK114. (136 aa)
Srsf1Serine/arginine-rich splicing factor 1. (253 aa)
Pan3PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA deca [...] (457 aa)
Taf15TATA-binding protein-associated factor 2N. (528 aa)
Dnd1Dead end protein homolog 1. (353 aa)
Igf2bp1Insulin-like growth factor 2 mRNA-binding protein 1. (549 aa)
Exosc3Exosome complex component RRP40. (275 aa)
MeiocUncharacterized protein C17orf104 homolog. (960 aa)
Fxr2Fragile X mental retardation syndrome-related protein 2. (647 aa)
FusRNA-binding protein FUS isoform X2. (516 aa)
Igf2bp3Insulin-like growth factor 2 mRNA-binding protein 3 isoform X1. (579 aa)
Tbrg4Protein TBRG4. (630 aa)
Pabpc1Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (636 aa)
Tob1Protein Tob1. (345 aa)
E2f1Transcription factor E2F1. (436 aa)
Plekhn1Pleckstrin homology domain-containing family N member 1. (578 aa)
Trim71E3 ubiquitin-protein ligase TRIM71. (842 aa)
Zfp36Tristetraprolin. (320 aa)
Thrap3Thyroid hormone receptor-associated protein 3. (953 aa)
Dis3l2DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase, such as ZCCHC11/TUT4. Mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. Mediates degradation of uridylated pre-let-7 miRNAs, contributing to the maintenance of embryonic stem (ES) cells. Essential for correct mi [...] (850 aa)
Eif4a3Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family. (419 aa)
Tent5aProtein FAM46A. (432 aa)
Pan2LOW QUALITY PROTEIN: PAB-dependent poly(A)-specific ribonuclease subunit PAN2. (980 aa)
IkbkeInhibitor of nuclear factor kappa-B kinase subunit epsilon isoform X1. (725 aa)
NbasNeuroblastoma-amplified sequence. (2341 aa)
Elavl4ELAV-like protein; Belongs to the RRM elav family. (386 aa)
Zc3h12aRibonuclease ZC3H12A. (592 aa)
Dhx9ATP-dependent RNA helicase A. (1375 aa)
Fmr1Fragile X mental retardation protein 1 isoform X1. (616 aa)
Csde1Cold shock domain-containing protein E1 isoform X1. (798 aa)
Pabpc4Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (644 aa)
Pnldc1poly(A)-specific ribonuclease PARN-like domain-containing protein 1. (524 aa)
DazlDeleted in azoospermia-like. (252 aa)
Cnot6lCCR4-NOT transcription complex subunit 6-like. (533 aa)
Pum2Pumilio homolog 2. (1029 aa)
Pnpt1Polyribonucleotide nucleotidyltransferase 1, mitochondrial. (783 aa)
Fastkd2FAST kinase domain-containing protein 2. (692 aa)
Ago2Protein argonaute-2; Required for RNA-mediated gene silencing (RNAi) by the RNA- induced silencing complex (RISC). The 'minimal RISC' appears to include AGO2 bound to a short guide RNA such as a microRNA (miRNA) or short interfering RNA (siRNA). These guide RNAs direct RISC to complementary mRNAs that are targets for RISC-mediated gene silencing. The precise mechanism of gene silencing depends on the degree of complementarity between the miRNA or siRNA and its target. Binding of RISC to a perfectly complementary mRNA generally results in silencing due to endonucleolytic cleavage of the [...] (855 aa)
Exosc8Exosome complex component RRP43 isoform X2. (276 aa)
HnrnpabHeterogeneous nuclear ribonucleoprotein A/B isoform X1. (328 aa)
Ybx2Y-box-binding protein 2. (282 aa)
BollProtein boule-like isoform X1. (280 aa)
Traf3ip2Adapter protein CIKS isoform X1. (109 aa)
Tent5cProtein FAM46C. (391 aa)
Dcp2Decapping mRNA 2. (405 aa)
Rock1Rho-associated protein kinase; Protein kinase which is a key regulator of actin cytoskeleton and cell polarity. (1368 aa)
Pcid2PCI domain-containing protein 2. (389 aa)
Paip1Polyadenylate-binding protein-interacting protein 1. (455 aa)
Samd4Protein Smaug homolog 1 isoform X3. (712 aa)
FtoAlpha-ketoglutarate-dependent dioxygenase FTO. (502 aa)
Elavl1ELAV-like protein; Belongs to the RRM elav family. (326 aa)
Your Current Organism:
Dipodomys ordii
NCBI taxonomy Id: 10020
Other names: D. ordii
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