9 items (Dipodomys ordii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Taf10	Transcription initiation factor TFIID subunit 10. (180 aa)
	Ercc3	TFIIH basal transcription factor complex helicase XPB subunit isoform X2. (779 aa)
	Gtf2e1	General transcription factor IIE subunit 1. (439 aa)
	Gtf2b	Transcription initiation factor IIB isoform X2. (316 aa)
	Gtf2a1	Transcription initiation factor IIA subunit 1. (359 aa)
	ENSDORP00000013558	annotation not available (206 aa)
	Gtf2h3	General transcription factor IIH subunit 3 isoform X1. (309 aa)
	Gtf2f2	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (249 aa)
	Brf1	Transcription factor IIIB 90 kDa subunit isoform X3. (649 aa)

Your Current Organism:

Dipodomys ordii

NCBI taxonomy Id: 10020
Other names: D. ordii

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Brf1	Gtf2b	ENSDORP00000002984	ENSDORP00000007532	Transcription factor IIIB 90 kDa subunit isoform X3.	Transcription initiation factor IIB isoform X2.	0.538
Brf1	Gtf2e1	ENSDORP00000002984	ENSDORP00000006830	Transcription factor IIIB 90 kDa subunit isoform X3.	General transcription factor IIE subunit 1.	0.470
ENSDORP00000013558	Gtf2b	ENSDORP00000013558	ENSDORP00000007532	annotation not available	Transcription initiation factor IIB isoform X2.	0.436
Ercc3	Gtf2a1	ENSDORP00000004371	ENSDORP00000010489	TFIIH basal transcription factor complex helicase XPB subunit isoform X2.	Transcription initiation factor IIA subunit 1.	0.978
Ercc3	Gtf2b	ENSDORP00000004371	ENSDORP00000007532	TFIIH basal transcription factor complex helicase XPB subunit isoform X2.	Transcription initiation factor IIB isoform X2.	0.993
Ercc3	Gtf2e1	ENSDORP00000004371	ENSDORP00000006830	TFIIH basal transcription factor complex helicase XPB subunit isoform X2.	General transcription factor IIE subunit 1.	0.998
Ercc3	Gtf2f2	ENSDORP00000004371	ENSDORP00000024756	TFIIH basal transcription factor complex helicase XPB subunit isoform X2.	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	0.988
Ercc3	Gtf2h3	ENSDORP00000004371	ENSDORP00000018800	TFIIH basal transcription factor complex helicase XPB subunit isoform X2.	General transcription factor IIH subunit 3 isoform X1.	0.999
Ercc3	Taf10	ENSDORP00000004371	ENSDORP00000000486	TFIIH basal transcription factor complex helicase XPB subunit isoform X2.	Transcription initiation factor TFIID subunit 10.	0.916
Gtf2a1	Ercc3	ENSDORP00000010489	ENSDORP00000004371	Transcription initiation factor IIA subunit 1.	TFIIH basal transcription factor complex helicase XPB subunit isoform X2.	0.978
Gtf2a1	Gtf2b	ENSDORP00000010489	ENSDORP00000007532	Transcription initiation factor IIA subunit 1.	Transcription initiation factor IIB isoform X2.	0.984
Gtf2a1	Gtf2e1	ENSDORP00000010489	ENSDORP00000006830	Transcription initiation factor IIA subunit 1.	General transcription factor IIE subunit 1.	0.980
Gtf2a1	Gtf2f2	ENSDORP00000010489	ENSDORP00000024756	Transcription initiation factor IIA subunit 1.	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	0.984
Gtf2a1	Gtf2h3	ENSDORP00000010489	ENSDORP00000018800	Transcription initiation factor IIA subunit 1.	General transcription factor IIH subunit 3 isoform X1.	0.966
Gtf2a1	Taf10	ENSDORP00000010489	ENSDORP00000000486	Transcription initiation factor IIA subunit 1.	Transcription initiation factor TFIID subunit 10.	0.917
Gtf2b	Brf1	ENSDORP00000007532	ENSDORP00000002984	Transcription initiation factor IIB isoform X2.	Transcription factor IIIB 90 kDa subunit isoform X3.	0.538
Gtf2b	ENSDORP00000013558	ENSDORP00000007532	ENSDORP00000013558	Transcription initiation factor IIB isoform X2.	annotation not available	0.436
Gtf2b	Ercc3	ENSDORP00000007532	ENSDORP00000004371	Transcription initiation factor IIB isoform X2.	TFIIH basal transcription factor complex helicase XPB subunit isoform X2.	0.993
Gtf2b	Gtf2a1	ENSDORP00000007532	ENSDORP00000010489	Transcription initiation factor IIB isoform X2.	Transcription initiation factor IIA subunit 1.	0.984
Gtf2b	Gtf2e1	ENSDORP00000007532	ENSDORP00000006830	Transcription initiation factor IIB isoform X2.	General transcription factor IIE subunit 1.	0.995