34 items (Dipodomys ordii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Afdn	Afadin isoform X8. (1812 aa)
	Nlgn1	Neuroligin-1 isoform X3. (843 aa)
	Rims1	Regulating synaptic membrane exocytosis protein 1 isoform X5. (219 aa)
	Reln	Reelin. (3415 aa)
	ENSDORP00000016358	annotation not available (337 aa)
	Shank1	SH3 and multiple ankyrin repeat domains protein 1. (1300 aa)
	Rims2	LOW QUALITY PROTEIN: regulating synaptic membrane exocytosis protein 2. (1483 aa)
	Grip2	Glutamate receptor-interacting protein 2. (1042 aa)
	Cacnb3	Voltage-dependent L-type calcium channel subunit beta-3 isoform X1. (485 aa)
	Grin2a	Glutamate receptor ionotropic, NMDA 2A. (1301 aa)
	Stx1b	syntaxin-1B; Belongs to the syntaxin family. (286 aa)
	Ptk2b	Protein-tyrosine kinase 2-beta isoform X1; Belongs to the protein kinase superfamily. Tyr protein kinase family. (1009 aa)
	Dbn1	Drebrin. (169 aa)
	Pten	Phosphatase and tensin homolog. (396 aa)
	Nlgn2	Neuroligin-2 isoform X1. (835 aa)
	Nlgn3	Neuroligin-3 isoform X1. (848 aa)
	Grin2c	Glutamate receptor ionotropic, NMDA 2C. (1021 aa)
	Ngfr	Tumor necrosis factor receptor superfamily member 16. (409 aa)
	Grin2b	Glutamate receptor ionotropic, NMDA 2B. (1103 aa)
	Stx1a	syntaxin-1A; Belongs to the syntaxin family. (288 aa)
	Ssh1	Protein phosphatase Slingshot homolog 1. (1010 aa)
	Tbc1d24	TBC1 domain family member 24. (322 aa)
	Nrxn1	Neurexin-1-beta isoform X1. (1515 aa)
	LOC106002162	Disks large homolog 4-like. (150 aa)
	Igsf11	Immunoglobulin superfamily member 11. (427 aa)
	Grin2d	Glutamate receptor, ionotropic, NMDA2D (epsilon 4). (1128 aa)
	Dlg4	Disks large homolog 4; Belongs to the MAGUK family. (657 aa)
	Grin1	LOW QUALITY PROTEIN: glutamate receptor ionotropic, NMDA 1. (926 aa)
	Gsk3b	Glycogen synthase kinase-3 beta isoform X1; Belongs to the protein kinase superfamily. (433 aa)
	Shank3	SH3 and multiple ankyrin repeat domains protein 3. (1417 aa)
	Baiap2	Brain-specific angiogenesis inhibitor 1-associated protein 2 isoform X1. (517 aa)
	ENSDORP00000024409	annotation not available (185 aa)
	Rgs4	Regulator of G-protein signaling 4 isoform X1. (205 aa)
	Chrna7	Neuronal acetylcholine receptor subunit alpha-7. (568 aa)

Your Current Organism:

Dipodomys ordii

NCBI taxonomy Id: 10020
Other names: D. ordii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Baiap2	Dlg4	ENSDORP00000023977	ENSDORP00000022410	Brain-specific angiogenesis inhibitor 1-associated protein 2 isoform X1.	Disks large homolog 4; Belongs to the MAGUK family.	0.752
Baiap2	LOC106002162	ENSDORP00000023977	ENSDORP00000019912	Brain-specific angiogenesis inhibitor 1-associated protein 2 isoform X1.	Disks large homolog 4-like.	0.752
Baiap2	Ptk2b	ENSDORP00000023977	ENSDORP00000009589	Brain-specific angiogenesis inhibitor 1-associated protein 2 isoform X1.	Protein-tyrosine kinase 2-beta isoform X1; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.569
Baiap2	Shank1	ENSDORP00000023977	ENSDORP00000015954	Brain-specific angiogenesis inhibitor 1-associated protein 2 isoform X1.	SH3 and multiple ankyrin repeat domains protein 1.	0.607
Baiap2	Shank3	ENSDORP00000023977	ENSDORP00000023482	Brain-specific angiogenesis inhibitor 1-associated protein 2 isoform X1.	SH3 and multiple ankyrin repeat domains protein 3.	0.664
Cacnb3	Rims2	ENSDORP00000011901	ENSDORP00000015792	Voltage-dependent L-type calcium channel subunit beta-3 isoform X1.	LOW QUALITY PROTEIN: regulating synaptic membrane exocytosis protein 2.	0.432
Chrna7	ENSDORP00000016358	ENSDORP00000026726	ENSDORP00000016358	Neuronal acetylcholine receptor subunit alpha-7.	annotation not available	0.609
Chrna7	Grin1	ENSDORP00000026726	ENSDORP00000022623	Neuronal acetylcholine receptor subunit alpha-7.	LOW QUALITY PROTEIN: glutamate receptor ionotropic, NMDA 1.	0.915
Chrna7	Grin2a	ENSDORP00000026726	ENSDORP00000010822	Neuronal acetylcholine receptor subunit alpha-7.	Glutamate receptor ionotropic, NMDA 2A.	0.889
Chrna7	Grin2b	ENSDORP00000026726	ENSDORP00000001455	Neuronal acetylcholine receptor subunit alpha-7.	Glutamate receptor ionotropic, NMDA 2B.	0.609
Chrna7	Grin2c	ENSDORP00000026726	ENSDORP00000004973	Neuronal acetylcholine receptor subunit alpha-7.	Glutamate receptor ionotropic, NMDA 2C.	0.859
Chrna7	Grin2d	ENSDORP00000026726	ENSDORP00000021849	Neuronal acetylcholine receptor subunit alpha-7.	Glutamate receptor, ionotropic, NMDA2D (epsilon 4).	0.865
Dlg4	Baiap2	ENSDORP00000022410	ENSDORP00000023977	Disks large homolog 4; Belongs to the MAGUK family.	Brain-specific angiogenesis inhibitor 1-associated protein 2 isoform X1.	0.752
Dlg4	ENSDORP00000016358	ENSDORP00000022410	ENSDORP00000016358	Disks large homolog 4; Belongs to the MAGUK family.	annotation not available	0.951
Dlg4	Grin1	ENSDORP00000022410	ENSDORP00000022623	Disks large homolog 4; Belongs to the MAGUK family.	LOW QUALITY PROTEIN: glutamate receptor ionotropic, NMDA 1.	0.986
Dlg4	Grin2a	ENSDORP00000022410	ENSDORP00000010822	Disks large homolog 4; Belongs to the MAGUK family.	Glutamate receptor ionotropic, NMDA 2A.	0.987
Dlg4	Grin2b	ENSDORP00000022410	ENSDORP00000001455	Disks large homolog 4; Belongs to the MAGUK family.	Glutamate receptor ionotropic, NMDA 2B.	0.951
Dlg4	Grin2c	ENSDORP00000022410	ENSDORP00000004973	Disks large homolog 4; Belongs to the MAGUK family.	Glutamate receptor ionotropic, NMDA 2C.	0.910
Dlg4	Grin2d	ENSDORP00000022410	ENSDORP00000021849	Disks large homolog 4; Belongs to the MAGUK family.	Glutamate receptor, ionotropic, NMDA2D (epsilon 4).	0.874
Dlg4	Nlgn1	ENSDORP00000022410	ENSDORP00000018039	Disks large homolog 4; Belongs to the MAGUK family.	Neuroligin-1 isoform X3.	0.917