(23 nodes) 90S preribosome network (Dipodomys ordii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Hunk	Hormonally up-regulated neu tumor-associated kinase. (686 aa)
	Bop1	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (734 aa)
	Utp18	U3 small nucleolar RNA-associated protein 18 homolog. (464 aa)
	Noc4l	Nucleolar complex protein 4 homolog. (518 aa)
	Imp3	U3 small nucleolar ribonucleoprotein protein IMP3. (184 aa)
	Rsl24d1	Probable ribosome biogenesis protein RLP24. (153 aa)
	Utp6	U3 small nucleolar RNA-associated protein 6 homolog. (569 aa)
	Wdr36	WD repeat-containing protein 36 isoform X1. (898 aa)
	Wdr3	WD repeat-containing protein 3 isoform X2. (951 aa)
	Pes1	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome; Belongs to the pescadillo family. (601 aa)
	Rrp7a	Ribosomal RNA-processing protein 7 homolog A. (279 aa)
	Wdr12	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (401 aa)
	Utp20	Small subunit processome component 20 homolog. (2721 aa)
	Noc2l	Nucleolar complex protein 2 homolog isoform X2. (718 aa)
	Nsa2	Ribosome biogenesis protein NSA2 homolog. (254 aa)
	Rrp36	Ribosomal RNA processing protein 36 homolog. (229 aa)
	Imp4	U3 small nucleolar ribonucleoprotein protein IMP4. (291 aa)
	Cmss1	Protein CMSS1. (279 aa)
	Nol6	Nucleolar protein 6. (1144 aa)
	Mphosph10	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family. (675 aa)
	Pwp2	Periodic tryptophan protein 2 homolog. (897 aa)
	Bms1	Ribosome biogenesis protein BMS1 homolog isoform X1. (1276 aa)
	Nop14	Nucleolar protein 14. (815 aa)

Your Current Organism:

Dipodomys ordii

NCBI taxonomy Id: 10020
Other names: D. ordii

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Bms1	Bop1	ENSDORP00000002802	ENSDORP00000024112	Ribosome biogenesis protein BMS1 homolog isoform X1.	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.935
Bms1	Cmss1	ENSDORP00000002802	ENSDORP00000009833	Ribosome biogenesis protein BMS1 homolog isoform X1.	Protein CMSS1.	0.603
Bms1	Imp3	ENSDORP00000002802	ENSDORP00000019218	Ribosome biogenesis protein BMS1 homolog isoform X1.	U3 small nucleolar ribonucleoprotein protein IMP3.	0.996
Bms1	Imp4	ENSDORP00000002802	ENSDORP00000010042	Ribosome biogenesis protein BMS1 homolog isoform X1.	U3 small nucleolar ribonucleoprotein protein IMP4.	0.998
Bms1	Mphosph10	ENSDORP00000002802	ENSDORP00000005625	Ribosome biogenesis protein BMS1 homolog isoform X1.	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.	0.999
Bms1	Noc2l	ENSDORP00000002802	ENSDORP00000012924	Ribosome biogenesis protein BMS1 homolog isoform X1.	Nucleolar complex protein 2 homolog isoform X2.	0.944
Bms1	Noc4l	ENSDORP00000002802	ENSDORP00000021289	Ribosome biogenesis protein BMS1 homolog isoform X1.	Nucleolar complex protein 4 homolog.	0.996
Bms1	Nol6	ENSDORP00000002802	ENSDORP00000005635	Ribosome biogenesis protein BMS1 homolog isoform X1.	Nucleolar protein 6.	0.999
Bms1	Nop14	ENSDORP00000002802	ENSDORP00000001117	Ribosome biogenesis protein BMS1 homolog isoform X1.	Nucleolar protein 14.	0.999
Bms1	Pes1	ENSDORP00000002802	ENSDORP00000015651	Ribosome biogenesis protein BMS1 homolog isoform X1.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome; Belongs to the pescadillo family.	0.940
Bms1	Pwp2	ENSDORP00000002802	ENSDORP00000002832	Ribosome biogenesis protein BMS1 homolog isoform X1.	Periodic tryptophan protein 2 homolog.	0.999
Bms1	Rrp36	ENSDORP00000002802	ENSDORP00000011459	Ribosome biogenesis protein BMS1 homolog isoform X1.	Ribosomal RNA processing protein 36 homolog.	0.879
Bms1	Rrp7a	ENSDORP00000002802	ENSDORP00000015179	Ribosome biogenesis protein BMS1 homolog isoform X1.	Ribosomal RNA-processing protein 7 homolog A.	0.998
Bms1	Rsl24d1	ENSDORP00000002802	ENSDORP00000018198	Ribosome biogenesis protein BMS1 homolog isoform X1.	Probable ribosome biogenesis protein RLP24.	0.843
Bms1	Utp18	ENSDORP00000002802	ENSDORP00000023316	Ribosome biogenesis protein BMS1 homolog isoform X1.	U3 small nucleolar RNA-associated protein 18 homolog.	0.999
Bms1	Utp20	ENSDORP00000002802	ENSDORP00000013891	Ribosome biogenesis protein BMS1 homolog isoform X1.	Small subunit processome component 20 homolog.	0.999
Bms1	Utp6	ENSDORP00000002802	ENSDORP00000018121	Ribosome biogenesis protein BMS1 homolog isoform X1.	U3 small nucleolar RNA-associated protein 6 homolog.	0.999
Bms1	Wdr12	ENSDORP00000002802	ENSDORP00000014395	Ribosome biogenesis protein BMS1 homolog isoform X1.	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.864
Bms1	Wdr3	ENSDORP00000002802	ENSDORP00000016661	Ribosome biogenesis protein BMS1 homolog isoform X1.	WD repeat-containing protein 3 isoform X2.	0.999
Bms1	Wdr36	ENSDORP00000002802	ENSDORP00000017899	Ribosome biogenesis protein BMS1 homolog isoform X1.	WD repeat-containing protein 36 isoform X1.	0.999