(65 nodes) Ciliary transition zone network (Dipodomys ordii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Rpgr	Retinitis pigmentosa GTPase regulator. (1056 aa)
	Ift88	Intraflagellar transport protein 88 homolog isoform X1. (825 aa)
	Tmem237	Transmembrane protein 237 isoform X2. (378 aa)
	Pcm1	Pericentriolar material 1 protein isoform X3. (2070 aa)
	Cplane2	REM2- and Rab-like small GTPase 1 isoform X2. (258 aa)
	Mak	Serine/threonine-protein kinase MAK isoform X1. (621 aa)
	B9d2	B9 domain-containing protein 2. (232 aa)
	Cetn1	Centrin-1. (173 aa)
	Tmem67	Meckelin isoform X1. (992 aa)
	Ift140	Intraflagellar transport protein 140 homolog. (1494 aa)
	Spata7	Spermatogenesis-associated protein 7. (525 aa)
	Bbs9	Protein PTHB1 isoform X3. (881 aa)
	Rcbtb1	RCC1 and BTB domain-containing protein 1. (323 aa)
	Adgrv1	G-protein coupled receptor 98; Belongs to the G-protein coupled receptor 2 family. (6243 aa)
	Ift57	Intraflagellar transport protein 57 homolog isoform X1. (429 aa)
	Cfap410	Protein C21orf2 homolog. (184 aa)
	Cetn3	Centrin-3 isoform X1. (171 aa)
	Ush1g	Usher syndrome type-1G protein isoform X1. (467 aa)
	Traf3ip1	TRAF3-interacting protein 1 isoform X4. (601 aa)
	Ift52	Intraflagellar transport protein 52 homolog isoform X2. (425 aa)
	Arl3	ADP-ribosylation factor-like protein 3; Belongs to the small GTPase superfamily. Arf family. (182 aa)
	Cfap36	Cilia- and flagella-associated protein 36 isoform X1. (341 aa)
	Dync2li1	Cytoplasmic dynein 2 light intermediate chain 1 isoform X2. (351 aa)
	Ccsap	Centriole, cilia and spindle-associated protein. (257 aa)
	Alpk1	Alpha-protein kinase 1. (1104 aa)
	Nipal4	Magnesium transporter NIPA4. (396 aa)
	Nphp4	Nephrocystin-4. (1421 aa)
	Ush2a	Usherin. (5191 aa)
	Myo7a	Unconventional myosin-VIIa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2208 aa)
	Cep290	Centrosomal protein of 290 kDa. (2451 aa)
	Tmem107	Transmembrane protein 107. (147 aa)
	Rpgrip1	X-linked retinitis pigmentosa GTPase regulator-interacting protein 1. (1270 aa)
	Cdkl4	Cyclin-dependent kinase-like 4. (321 aa)
	Cc2d2a	Coiled-coil and C2 domain-containing protein 2A. (1580 aa)
	Tmem216	Transmembrane protein 216 isoform X1. (141 aa)
	Sptbn5	Spectrin beta chain, non-erythrocytic 5. (1120 aa)
	Nphp1	Nephrocystin-1. (672 aa)
	Tsga10ip	Testis-specific protein 10-interacting protein. (159 aa)
	Fam92a	Protein FAM92A1 isoform X2. (323 aa)
	Tmem80	Transmembrane protein 80. (123 aa)
	Rp1	Oxygen-regulated protein 1. (2052 aa)
	Ttbk2	Tau-tubulin kinase 2. (436 aa)
	Mks1	Meckel syndrome type 1 protein. (559 aa)
	Kif3a	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (726 aa)
	Gm29133	Predicted gene 29133. (199 aa)
	Wdr19	WD repeat-containing protein 19. (1266 aa)
	Fam161a	Protein FAM161A isoform X2. (487 aa)
	Kiaa1549	LOW QUALITY PROTEIN: UPF0606 protein KIAA1549 homolog. (194 aa)
	Bicc1	Protein bicaudal C homolog 1 isoform X1. (974 aa)
	Cc2d2b	Protein CC2D2B isoform X2. (1005 aa)
	Unc119b	Protein unc-119 homolog B. (228 aa)
	Dfnb31	Whirlin. (465 aa)
	Tmem17	Transmembrane protein 17. (198 aa)
	Rpgrip1l	Protein fantom. (1283 aa)
	ENSDORP00000001292	annotation not available (184 aa)
	Cdkl1	Cyclin-dependent kinase-like 1 isoform X1; Belongs to the protein kinase superfamily. (362 aa)
	ENSDORP00000026513	annotation not available (164 aa)
	LOC105989845	UNC119-binding protein C5orf30 homolog. (206 aa)
	Topors	E3 ubiquitin-protein ligase Topors. (984 aa)
	Cetn2	Centrin-2. (173 aa)
	Gnat1	Guanine nucleotide-binding protein G(T) subunit alpha-1. (350 aa)
	Nek4	Serine/threonine-protein kinase Nek4. (274 aa)
	Ift122	Intraflagellar transport protein 122 homolog isoform X2. (1242 aa)
	Iqcb1	IQ calmodulin-binding motif-containing protein 1. (582 aa)
	B9d1	B9 domain-containing protein 1. (166 aa)

Your Current Organism:

Dipodomys ordii

NCBI taxonomy Id: 10020
Other names: D. ordii

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Adgrv1	Dfnb31	ENSDORP00000005830	ENSDORP00000025085	G-protein coupled receptor 98; Belongs to the G-protein coupled receptor 2 family.	Whirlin.	0.537
Adgrv1	ENSDORP00000001292	ENSDORP00000005830	ENSDORP00000001292	G-protein coupled receptor 98; Belongs to the G-protein coupled receptor 2 family.	annotation not available	0.537
Adgrv1	ENSDORP00000026513	ENSDORP00000005830	ENSDORP00000026513	G-protein coupled receptor 98; Belongs to the G-protein coupled receptor 2 family.	annotation not available	0.537
Adgrv1	Myo7a	ENSDORP00000005830	ENSDORP00000014080	G-protein coupled receptor 98; Belongs to the G-protein coupled receptor 2 family.	Unconventional myosin-VIIa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.621
Adgrv1	Ush1g	ENSDORP00000005830	ENSDORP00000008204	G-protein coupled receptor 98; Belongs to the G-protein coupled receptor 2 family.	Usher syndrome type-1G protein isoform X1.	0.579
Adgrv1	Ush2a	ENSDORP00000005830	ENSDORP00000013974	G-protein coupled receptor 98; Belongs to the G-protein coupled receptor 2 family.	Usherin.	0.569
Arl3	B9d1	ENSDORP00000011362	ENSDORP00000001173	ADP-ribosylation factor-like protein 3; Belongs to the small GTPase superfamily. Arf family.	B9 domain-containing protein 1.	0.551
Arl3	B9d2	ENSDORP00000011362	ENSDORP00000003372	ADP-ribosylation factor-like protein 3; Belongs to the small GTPase superfamily. Arf family.	B9 domain-containing protein 2.	0.570
Arl3	Bbs9	ENSDORP00000011362	ENSDORP00000004515	ADP-ribosylation factor-like protein 3; Belongs to the small GTPase superfamily. Arf family.	Protein PTHB1 isoform X3.	0.666
Arl3	Cep290	ENSDORP00000011362	ENSDORP00000014958	ADP-ribosylation factor-like protein 3; Belongs to the small GTPase superfamily. Arf family.	Centrosomal protein of 290 kDa.	0.455
Arl3	Cfap36	ENSDORP00000011362	ENSDORP00000011477	ADP-ribosylation factor-like protein 3; Belongs to the small GTPase superfamily. Arf family.	Cilia- and flagella-associated protein 36 isoform X1.	0.964
Arl3	Cplane2	ENSDORP00000011362	ENSDORP00000001841	ADP-ribosylation factor-like protein 3; Belongs to the small GTPase superfamily. Arf family.	REM2- and Rab-like small GTPase 1 isoform X2.	0.563
Arl3	Gnat1	ENSDORP00000011362	ENSDORP00000000350	ADP-ribosylation factor-like protein 3; Belongs to the small GTPase superfamily. Arf family.	Guanine nucleotide-binding protein G(T) subunit alpha-1.	0.526
Arl3	Ift122	ENSDORP00000011362	ENSDORP00000000852	ADP-ribosylation factor-like protein 3; Belongs to the small GTPase superfamily. Arf family.	Intraflagellar transport protein 122 homolog isoform X2.	0.578
Arl3	Ift140	ENSDORP00000011362	ENSDORP00000003892	ADP-ribosylation factor-like protein 3; Belongs to the small GTPase superfamily. Arf family.	Intraflagellar transport protein 140 homolog.	0.400
Arl3	Ift57	ENSDORP00000011362	ENSDORP00000006543	ADP-ribosylation factor-like protein 3; Belongs to the small GTPase superfamily. Arf family.	Intraflagellar transport protein 57 homolog isoform X1.	0.582
Arl3	Ift88	ENSDORP00000011362	ENSDORP00000001471	ADP-ribosylation factor-like protein 3; Belongs to the small GTPase superfamily. Arf family.	Intraflagellar transport protein 88 homolog isoform X1.	0.663
Arl3	Iqcb1	ENSDORP00000011362	ENSDORP00000001045	ADP-ribosylation factor-like protein 3; Belongs to the small GTPase superfamily. Arf family.	IQ calmodulin-binding motif-containing protein 1.	0.598
Arl3	Kif3a	ENSDORP00000011362	ENSDORP00000020530	ADP-ribosylation factor-like protein 3; Belongs to the small GTPase superfamily. Arf family.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.435
Arl3	Nphp1	ENSDORP00000011362	ENSDORP00000018409	ADP-ribosylation factor-like protein 3; Belongs to the small GTPase superfamily. Arf family.	Nephrocystin-1.	0.497