(50 nodes) Ciliary basal body network (Dipodomys ordii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Nphp4	Nephrocystin-4. (1421 aa)
	Cetn2	Centrin-2. (173 aa)
	Efhc2	EF-hand domain-containing family member C2. (751 aa)
	Nek4	Serine/threonine-protein kinase Nek4. (274 aa)
	Sdccag8	Serologically defined colon cancer antigen 8. (675 aa)
	Ift122	Intraflagellar transport protein 122 homolog isoform X2. (1242 aa)
	Ift88	Intraflagellar transport protein 88 homolog isoform X1. (825 aa)
	Pcm1	Pericentriolar material 1 protein isoform X3. (2070 aa)
	Ift20	Intraflagellar transport protein 20 homolog isoform X1. (132 aa)
	Wdr11	WD repeat-containing protein 11. (1221 aa)
	Tbc1d30	TBC1 domain family member 30. (763 aa)
	Mkks	McKusick-Kaufman/Bardet-Biedl syndromes putative chaperonin. (569 aa)
	B9d2	B9 domain-containing protein 2. (232 aa)
	Ift140	Intraflagellar transport protein 140 homolog. (1494 aa)
	Poc1a	POC1 centriolar protein homolog A. (404 aa)
	Ccdc176	Basal body-orientation factor 1. (147 aa)
	Ahi1	Jouberin isoform X3. (1053 aa)
	Fam92b	Protein FAM92B. (121 aa)
	Ift57	Intraflagellar transport protein 57 homolog isoform X1. (429 aa)
	Cetn3	Centrin-3 isoform X1. (171 aa)
	Pcnt	Pericentrin. (2788 aa)
	Ttll11	Tubulin polyglutamylase TTLL11. (661 aa)
	Bbs7	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function. (715 aa)
	Fam166a	Protein FAM166A. (315 aa)
	LOC105997857	Casein kinase I isoform alpha-like isoform X2; Belongs to the protein kinase superfamily. (336 aa)
	Cdc14a	Dual specificity protein phosphatase CDC14A isoform X1. (611 aa)
	Fam161a	Protein FAM161A isoform X2. (487 aa)
	Rab28	Ras-related protein Rab-28 isoform X1. (221 aa)
	Armc9	lisH domain-containing protein ARMC9. (799 aa)
	Mks1	Meckel syndrome type 1 protein. (559 aa)
	Fuz	Protein fuzzy homolog isoform X2. (415 aa)
	Dzip1l	Zinc finger protein DZIP1L. (681 aa)
	Rabl2b	Rab-like protein 2B isoform X1. (223 aa)
	Cep290	Centrosomal protein of 290 kDa. (2451 aa)
	Cby1	Protein chibby homolog 1. (127 aa)
	Togaram1	LOW QUALITY PROTEIN: protein FAM179B. (1707 aa)
	Ift81	Intraflagellar transport protein 81 homolog. (628 aa)
	Traf3ip1	TRAF3-interacting protein 1 isoform X4. (601 aa)
	Tapt1	Transmembrane anterior posterior transformation protein 1 homolog. (501 aa)
	Ift52	Intraflagellar transport protein 52 homolog isoform X2. (425 aa)
	Dync2li1	Cytoplasmic dynein 2 light intermediate chain 1 isoform X2. (351 aa)
	Cfap157	LOW QUALITY PROTEIN: uncharacterized protein C9orf117 homolog. (518 aa)
	1700001L19Rik	Uncharacterized protein C5orf49 homolog. (143 aa)
	Poc1b	POC1 centriolar protein homolog B isoform X1. (534 aa)
	C2cd3	C2 domain-containing protein 3. (2245 aa)
	Iqcd	IQ domain-containing protein D isoform X1. (455 aa)
	Rpgr	Retinitis pigmentosa GTPase regulator. (1056 aa)
	ENSDORP00000025740	annotation not available (331 aa)
	Rpgrip1l	Protein fantom. (1283 aa)
	Ofd1	Oral-facial-digital syndrome 1 protein. (146 aa)

Your Current Organism:

Dipodomys ordii

NCBI taxonomy Id: 10020
Other names: D. ordii

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
1700001L19Rik	Efhc2	ENSDORP00000012853	ENSDORP00000000249	Uncharacterized protein C5orf49 homolog.	EF-hand domain-containing family member C2.	0.741
1700001L19Rik	Ift57	ENSDORP00000012853	ENSDORP00000006543	Uncharacterized protein C5orf49 homolog.	Intraflagellar transport protein 57 homolog isoform X1.	0.538
1700001L19Rik	Tbc1d30	ENSDORP00000012853	ENSDORP00000003036	Uncharacterized protein C5orf49 homolog.	TBC1 domain family member 30.	0.561
Ahi1	B9d2	ENSDORP00000005586	ENSDORP00000003372	Jouberin isoform X3.	B9 domain-containing protein 2.	0.873
Ahi1	Cep290	ENSDORP00000005586	ENSDORP00000014958	Jouberin isoform X3.	Centrosomal protein of 290 kDa.	0.606
Ahi1	Ift122	ENSDORP00000005586	ENSDORP00000000852	Jouberin isoform X3.	Intraflagellar transport protein 122 homolog isoform X2.	0.406
Ahi1	Ift88	ENSDORP00000005586	ENSDORP00000001471	Jouberin isoform X3.	Intraflagellar transport protein 88 homolog isoform X1.	0.587
Ahi1	Mks1	ENSDORP00000005586	ENSDORP00000020415	Jouberin isoform X3.	Meckel syndrome type 1 protein.	0.878
Ahi1	Nphp4	ENSDORP00000005586	ENSDORP00000013666	Jouberin isoform X3.	Nephrocystin-4.	0.551
Ahi1	Ofd1	ENSDORP00000005586	ENSDORP00000025189	Jouberin isoform X3.	Oral-facial-digital syndrome 1 protein.	0.572
Ahi1	Pcnt	ENSDORP00000005586	ENSDORP00000006796	Jouberin isoform X3.	Pericentrin.	0.507
Ahi1	Rpgr	ENSDORP00000005586	ENSDORP00000025763	Jouberin isoform X3.	Retinitis pigmentosa GTPase regulator.	0.405
Ahi1	Rpgrip1l	ENSDORP00000005586	ENSDORP00000025583	Jouberin isoform X3.	Protein fantom.	0.606
B9d2	Ahi1	ENSDORP00000003372	ENSDORP00000005586	B9 domain-containing protein 2.	Jouberin isoform X3.	0.873
B9d2	Cep290	ENSDORP00000003372	ENSDORP00000014958	B9 domain-containing protein 2.	Centrosomal protein of 290 kDa.	0.569
B9d2	Ift122	ENSDORP00000003372	ENSDORP00000000852	B9 domain-containing protein 2.	Intraflagellar transport protein 122 homolog isoform X2.	0.589
B9d2	Ift140	ENSDORP00000003372	ENSDORP00000003892	B9 domain-containing protein 2.	Intraflagellar transport protein 140 homolog.	0.435
B9d2	Ift20	ENSDORP00000003372	ENSDORP00000002404	B9 domain-containing protein 2.	Intraflagellar transport protein 20 homolog isoform X1.	0.572
B9d2	Mks1	ENSDORP00000003372	ENSDORP00000020415	B9 domain-containing protein 2.	Meckel syndrome type 1 protein.	0.939
B9d2	Nphp4	ENSDORP00000003372	ENSDORP00000013666	B9 domain-containing protein 2.	Nephrocystin-4.	0.564