12 items (Dipodomys ordii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Mta2	Metastasis-associated protein MTA2. (561 aa)
	Mta1	Metastasis-associated protein MTA1. (704 aa)
	Rbbp7	Histone-binding protein RBBP7. (416 aa)
	Chd4	chromodomain-helicase-DNA-binding protein 4 isoform X2. (1942 aa)
	Gatad2a	Transcriptional repressor p66-alpha isoform X1. (623 aa)
	Sall1	Sal-like protein 1. (144 aa)
	Csnk2a1	Casein kinase II subunit alpha; Belongs to the protein kinase superfamily. (391 aa)
	Chd5	chromodomain-helicase-DNA-binding protein 5. (1928 aa)
	Hdac2	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (488 aa)
	Chd3	chromodomain-helicase-DNA-binding protein 3. (1964 aa)
	ENSDORP00000027329	annotation not available (278 aa)
	Mta3	Metastasis-associated protein MTA3. (576 aa)

Your Current Organism:

Dipodomys ordii

NCBI taxonomy Id: 10020
Other names: D. ordii

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Chd3	Chd4	ENSDORP00000010071	ENSDORP00000020916	chromodomain-helicase-DNA-binding protein 3.	chromodomain-helicase-DNA-binding protein 4 isoform X2.	0.936
Chd3	ENSDORP00000027329	ENSDORP00000010071	ENSDORP00000027329	chromodomain-helicase-DNA-binding protein 3.	annotation not available	0.918
Chd3	Gatad2a	ENSDORP00000010071	ENSDORP00000018585	chromodomain-helicase-DNA-binding protein 3.	Transcriptional repressor p66-alpha isoform X1.	0.980
Chd3	Hdac2	ENSDORP00000010071	ENSDORP00000012520	chromodomain-helicase-DNA-binding protein 3.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.973
Chd3	Mta1	ENSDORP00000010071	ENSDORP00000001265	chromodomain-helicase-DNA-binding protein 3.	Metastasis-associated protein MTA1.	0.958
Chd3	Mta2	ENSDORP00000010071	ENSDORP00000003753	chromodomain-helicase-DNA-binding protein 3.	Metastasis-associated protein MTA2.	0.973
Chd3	Mta3	ENSDORP00000010071	ENSDORP00000023961	chromodomain-helicase-DNA-binding protein 3.	Metastasis-associated protein MTA3.	0.943
Chd3	Rbbp7	ENSDORP00000010071	ENSDORP00000000830	chromodomain-helicase-DNA-binding protein 3.	Histone-binding protein RBBP7.	0.918
Chd3	Sall1	ENSDORP00000010071	ENSDORP00000003970	chromodomain-helicase-DNA-binding protein 3.	Sal-like protein 1.	0.670
Chd4	Chd3	ENSDORP00000020916	ENSDORP00000010071	chromodomain-helicase-DNA-binding protein 4 isoform X2.	chromodomain-helicase-DNA-binding protein 3.	0.936
Chd4	Chd5	ENSDORP00000020916	ENSDORP00000017407	chromodomain-helicase-DNA-binding protein 4 isoform X2.	chromodomain-helicase-DNA-binding protein 5.	0.587
Chd4	Csnk2a1	ENSDORP00000020916	ENSDORP00000019313	chromodomain-helicase-DNA-binding protein 4 isoform X2.	Casein kinase II subunit alpha; Belongs to the protein kinase superfamily.	0.422
Chd4	ENSDORP00000027329	ENSDORP00000020916	ENSDORP00000027329	chromodomain-helicase-DNA-binding protein 4 isoform X2.	annotation not available	0.923
Chd4	Gatad2a	ENSDORP00000020916	ENSDORP00000018585	chromodomain-helicase-DNA-binding protein 4 isoform X2.	Transcriptional repressor p66-alpha isoform X1.	0.981
Chd4	Hdac2	ENSDORP00000020916	ENSDORP00000012520	chromodomain-helicase-DNA-binding protein 4 isoform X2.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.994
Chd4	Mta1	ENSDORP00000020916	ENSDORP00000001265	chromodomain-helicase-DNA-binding protein 4 isoform X2.	Metastasis-associated protein MTA1.	0.973
Chd4	Mta2	ENSDORP00000020916	ENSDORP00000003753	chromodomain-helicase-DNA-binding protein 4 isoform X2.	Metastasis-associated protein MTA2.	0.985
Chd4	Mta3	ENSDORP00000020916	ENSDORP00000023961	chromodomain-helicase-DNA-binding protein 4 isoform X2.	Metastasis-associated protein MTA3.	0.963
Chd4	Rbbp7	ENSDORP00000020916	ENSDORP00000000830	chromodomain-helicase-DNA-binding protein 4 isoform X2.	Histone-binding protein RBBP7.	0.923
Chd4	Sall1	ENSDORP00000020916	ENSDORP00000003970	chromodomain-helicase-DNA-binding protein 4 isoform X2.	Sal-like protein 1.	0.615