18 items (Dipodomys ordii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Syngap1	ras/Rap GTPase-activating protein SynGAP. (1343 aa)
	Tanc2	Protein TANC2. (1940 aa)
	Psd	PH and SEC7 domain-containing protein 1. (1024 aa)
	Sh3gl3	endophilin-A3. (346 aa)
	Dlg3	Disks large homolog 3 isoform X1; Belongs to the MAGUK family. (849 aa)
	Actn2	Alpha-actinin-2-like. (720 aa)
	Nr3c2	Mineralocorticoid receptor isoform X1. (986 aa)
	Tnik	TRAF2 and NCK-interacting protein kinase. (1315 aa)
	Iqsec1	IQ motif and SEC7 domain-containing protein 1 isoform X1. (1084 aa)
	Ctnnd1	Catenin delta-1 isoform X1. (964 aa)
	Tanc1	Protein TANC1. (1859 aa)
	Iqsec2	IQ motif and SEC7 domain-containing protein 2 isoform X1. (1488 aa)
	ENSDORP00000021001	annotation not available (353 aa)
	Dnm2	Dynamin-2 isoform X5; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (870 aa)
	Shank3	SH3 and multiple ankyrin repeat domains protein 3. (1417 aa)
	Baiap2	Brain-specific angiogenesis inhibitor 1-associated protein 2 isoform X1. (517 aa)
	Dlgap1	Disks large-associated protein 1 isoform X1. (993 aa)
	Cdkl5	Cyclin-dependent kinase-like 5. (945 aa)

Your Current Organism:

Dipodomys ordii

NCBI taxonomy Id: 10020
Other names: D. ordii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Actn2	Baiap2	ENSDORP00000015124	ENSDORP00000023977	Alpha-actinin-2-like.	Brain-specific angiogenesis inhibitor 1-associated protein 2 isoform X1.	0.506
Actn2	Dlg3	ENSDORP00000015124	ENSDORP00000013249	Alpha-actinin-2-like.	Disks large homolog 3 isoform X1; Belongs to the MAGUK family.	0.510
Actn2	Shank3	ENSDORP00000015124	ENSDORP00000023482	Alpha-actinin-2-like.	SH3 and multiple ankyrin repeat domains protein 3.	0.437
Baiap2	Actn2	ENSDORP00000023977	ENSDORP00000015124	Brain-specific angiogenesis inhibitor 1-associated protein 2 isoform X1.	Alpha-actinin-2-like.	0.506
Baiap2	Dlg3	ENSDORP00000023977	ENSDORP00000013249	Brain-specific angiogenesis inhibitor 1-associated protein 2 isoform X1.	Disks large homolog 3 isoform X1; Belongs to the MAGUK family.	0.615
Baiap2	Iqsec2	ENSDORP00000023977	ENSDORP00000020783	Brain-specific angiogenesis inhibitor 1-associated protein 2 isoform X1.	IQ motif and SEC7 domain-containing protein 2 isoform X1.	0.535
Baiap2	Shank3	ENSDORP00000023977	ENSDORP00000023482	Brain-specific angiogenesis inhibitor 1-associated protein 2 isoform X1.	SH3 and multiple ankyrin repeat domains protein 3.	0.664
Baiap2	Syngap1	ENSDORP00000023977	ENSDORP00000018948	Brain-specific angiogenesis inhibitor 1-associated protein 2 isoform X1.	ras/Rap GTPase-activating protein SynGAP.	0.573
Dlg3	Actn2	ENSDORP00000013249	ENSDORP00000015124	Disks large homolog 3 isoform X1; Belongs to the MAGUK family.	Alpha-actinin-2-like.	0.510
Dlg3	Baiap2	ENSDORP00000013249	ENSDORP00000023977	Disks large homolog 3 isoform X1; Belongs to the MAGUK family.	Brain-specific angiogenesis inhibitor 1-associated protein 2 isoform X1.	0.615
Dlg3	Dlgap1	ENSDORP00000013249	ENSDORP00000027489	Disks large homolog 3 isoform X1; Belongs to the MAGUK family.	Disks large-associated protein 1 isoform X1.	0.918
Dlg3	Shank3	ENSDORP00000013249	ENSDORP00000023482	Disks large homolog 3 isoform X1; Belongs to the MAGUK family.	SH3 and multiple ankyrin repeat domains protein 3.	0.781
Dlg3	Syngap1	ENSDORP00000013249	ENSDORP00000018948	Disks large homolog 3 isoform X1; Belongs to the MAGUK family.	ras/Rap GTPase-activating protein SynGAP.	0.780
Dlgap1	Dlg3	ENSDORP00000027489	ENSDORP00000013249	Disks large-associated protein 1 isoform X1.	Disks large homolog 3 isoform X1; Belongs to the MAGUK family.	0.918
Dlgap1	ENSDORP00000021001	ENSDORP00000027489	ENSDORP00000021001	Disks large-associated protein 1 isoform X1.	annotation not available	0.415
Dlgap1	Iqsec2	ENSDORP00000027489	ENSDORP00000020783	Disks large-associated protein 1 isoform X1.	IQ motif and SEC7 domain-containing protein 2 isoform X1.	0.452
Dlgap1	Shank3	ENSDORP00000027489	ENSDORP00000023482	Disks large-associated protein 1 isoform X1.	SH3 and multiple ankyrin repeat domains protein 3.	0.949
Dlgap1	Syngap1	ENSDORP00000027489	ENSDORP00000018948	Disks large-associated protein 1 isoform X1.	ras/Rap GTPase-activating protein SynGAP.	0.628
Dlgap1	Tanc1	ENSDORP00000027489	ENSDORP00000019384	Disks large-associated protein 1 isoform X1.	Protein TANC1.	0.513
Dlgap1	Tanc2	ENSDORP00000027489	ENSDORP00000008149	Disks large-associated protein 1 isoform X1.	Protein TANC2.	0.423