32 items (Dipodomys ordii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Chd1	chromodomain-helicase-DNA-binding protein 1 isoform X4. (1713 aa)
	Smarcal1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily. (917 aa)
	Ttf2	Transcription termination factor 2. (1114 aa)
	Chd1l	chromodomain-helicase-DNA-binding protein 1-like isoform X1. (901 aa)
	Smarcad1	annotation not available (1024 aa)
	Hells	Lymphoid-specific helicase. (837 aa)
	Ino80	DNA helicase INO80. (1011 aa)
	Shprh	E3 ubiquitin-protein ligase SHPRH isoform X1. (1678 aa)
	Smarca2	Probable global transcription activator SNF2L2 isoform X1. (1589 aa)
	Btaf1	TATA-binding protein-associated factor 172. (1817 aa)
	Chd5	chromodomain-helicase-DNA-binding protein 5. (1928 aa)
	Rad54l2	Helicase ARIP4. (1389 aa)
	Atrx	Transcriptional regulator ATRX isoform X1. (2472 aa)
	Chd4	chromodomain-helicase-DNA-binding protein 4 isoform X2. (1942 aa)
	Chd6	chromodomain-helicase-DNA-binding protein 6. (546 aa)
	Chd2	chromodomain-helicase-DNA-binding protein 2. (208 aa)
	Rad54l	LOW QUALITY PROTEIN: DNA repair and recombination protein RAD54-like. (737 aa)
	Zranb3	DNA annealing helicase and endonuclease ZRANB3. (565 aa)
	Ercc6l	DNA excision repair protein ERCC-6-like. (1235 aa)
	Chd9	chromodomain-helicase-DNA-binding protein 9 isoform X4. (1999 aa)
	Smarca1	Probable global transcription activator SNF2L1 isoform X2. (1041 aa)
	LOC105982004	Helicase SRCAP isoform X5. (3184 aa)
	Chd3	chromodomain-helicase-DNA-binding protein 3. (1964 aa)
	Ercc6l2	DNA excision repair protein ERCC-6-like 2 isoform X1. (460 aa)
	Chd7	chromodomain-helicase-DNA-binding protein 7 isoform X1. (2995 aa)
	Smarca5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5. (959 aa)
	Smarca4	Transcription activator BRG1. (1513 aa)
	Rad54b	DNA repair and recombination protein RAD54B isoform X1. (898 aa)
	Ercc6	DNA excision repair protein ERCC-6. (1480 aa)
	Chd8	Chromodomain-helicase-DNA-binding protein 8; DNA helicase that acts as a chromatin remodeling factor and regulates transcription. Acts as a transcription repressor by remodeling chromatin structure and recruiting histone H1 to target genes. Suppresses p53/TP53-mediated apoptosis by recruiting histone H1 and preventing p53/TP53 transactivation activity. Acts as a negative regulator of Wnt signaling pathway by regulating beta-catenin (CTNNB1) activity. Negatively regulates CTNNB1-targeted gene expression by being recruited specifically to the promoter regions of several CTNNB1 responsive [...] (2478 aa)
	Hltf	Helicase-like transcription factor isoform X5. (1004 aa)
	Ep400	E1A-binding protein p400. (3064 aa)

Your Current Organism:

Dipodomys ordii

NCBI taxonomy Id: 10020
Other names: D. ordii

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Atrx	Btaf1	ENSDORP00000018863	ENSDORP00000000092	Transcriptional regulator ATRX isoform X1.	TATA-binding protein-associated factor 172.	0.432
Atrx	Rad54b	ENSDORP00000018863	ENSDORP00000002339	Transcriptional regulator ATRX isoform X1.	DNA repair and recombination protein RAD54B isoform X1.	0.721
Atrx	Rad54l	ENSDORP00000018863	ENSDORP00000027261	Transcriptional regulator ATRX isoform X1.	LOW QUALITY PROTEIN: DNA repair and recombination protein RAD54-like.	0.556
Atrx	Smarca2	ENSDORP00000018863	ENSDORP00000013957	Transcriptional regulator ATRX isoform X1.	Probable global transcription activator SNF2L2 isoform X1.	0.482
Atrx	Smarca4	ENSDORP00000018863	ENSDORP00000002392	Transcriptional regulator ATRX isoform X1.	Transcription activator BRG1.	0.476
Atrx	Smarcad1	ENSDORP00000018863	ENSDORP00000011595	Transcriptional regulator ATRX isoform X1.	annotation not available	0.472
Btaf1	Atrx	ENSDORP00000000092	ENSDORP00000018863	TATA-binding protein-associated factor 172.	Transcriptional regulator ATRX isoform X1.	0.432
Btaf1	Chd1	ENSDORP00000000092	ENSDORP00000014892	TATA-binding protein-associated factor 172.	chromodomain-helicase-DNA-binding protein 1 isoform X4.	0.611
Btaf1	Chd1l	ENSDORP00000000092	ENSDORP00000012750	TATA-binding protein-associated factor 172.	chromodomain-helicase-DNA-binding protein 1-like isoform X1.	0.634
Btaf1	Chd2	ENSDORP00000000092	ENSDORP00000026309	TATA-binding protein-associated factor 172.	chromodomain-helicase-DNA-binding protein 2.	0.450
Btaf1	Chd3	ENSDORP00000000092	ENSDORP00000010071	TATA-binding protein-associated factor 172.	chromodomain-helicase-DNA-binding protein 3.	0.453
Btaf1	Chd4	ENSDORP00000000092	ENSDORP00000020916	TATA-binding protein-associated factor 172.	chromodomain-helicase-DNA-binding protein 4 isoform X2.	0.452
Btaf1	Chd5	ENSDORP00000000092	ENSDORP00000017407	TATA-binding protein-associated factor 172.	chromodomain-helicase-DNA-binding protein 5.	0.454
Btaf1	Chd6	ENSDORP00000000092	ENSDORP00000022991	TATA-binding protein-associated factor 172.	chromodomain-helicase-DNA-binding protein 6.	0.483
Btaf1	Chd7	ENSDORP00000000092	ENSDORP00000003290	TATA-binding protein-associated factor 172.	chromodomain-helicase-DNA-binding protein 7 isoform X1.	0.440
Btaf1	Chd8	ENSDORP00000000092	ENSDORP00000001923	TATA-binding protein-associated factor 172.	Chromodomain-helicase-DNA-binding protein 8; DNA helicase that acts as a chromatin remodeling factor and regulates transcription. Acts as a transcription repressor by remodeling chromatin structure and recruiting histone H1 to target genes. Suppresses p53/TP53-mediated apoptosis by recruiting histone H1 and preventing p53/TP53 transactivation activity. Acts as a negative regulator of Wnt signaling pathway by regulating beta-catenin (CTNNB1) activity. Negatively regulates CTNNB1-targeted gene expression by being recruited specifically to the promoter regions of several CTNNB1 responsive [...]	0.469
Btaf1	Chd9	ENSDORP00000000092	ENSDORP00000008003	TATA-binding protein-associated factor 172.	chromodomain-helicase-DNA-binding protein 9 isoform X4.	0.506
Btaf1	Ep400	ENSDORP00000000092	ENSDORP00000014264	TATA-binding protein-associated factor 172.	E1A-binding protein p400.	0.412
Btaf1	Ercc6	ENSDORP00000000092	ENSDORP00000001929	TATA-binding protein-associated factor 172.	DNA excision repair protein ERCC-6.	0.531
Btaf1	Ercc6l	ENSDORP00000000092	ENSDORP00000007376	TATA-binding protein-associated factor 172.	DNA excision repair protein ERCC-6-like.	0.502