17 items (Dipodomys ordii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Grid2	Glutamate receptor ionotropic, delta-2 isoform X1. (977 aa)
	Gria3	Glutamate receptor 3 isoform X2. (894 aa)
	Grin2b	Glutamate receptor ionotropic, NMDA 2B. (1103 aa)
	Gria1	Glutamate receptor 1 isoform X2. (906 aa)
	Grin2a	Glutamate receptor ionotropic, NMDA 2A. (1301 aa)
	Gria2	Glutamate receptor 2. (842 aa)
	Grin2c	Glutamate receptor ionotropic, NMDA 2C. (1021 aa)
	Grik4	Glutamate receptor ionotropic, kainate 4. (765 aa)
	Grin3b	Glutamate receptor ionotropic, NMDA 3B; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (933 aa)
	Gria4	Glutamate receptor 4. (193 aa)
	Grin1	LOW QUALITY PROTEIN: glutamate receptor ionotropic, NMDA 1. (926 aa)
	Grik1	Glutamate receptor ionotropic, kainate 1 isoform X1. (926 aa)
	Grik2	Glutamate receptor ionotropic, kainate 2 isoform X1. (908 aa)
	Grik5	Glutamate receptor ionotropic, kainate 5. (985 aa)
	Grid1	Glutamate receptor ionotropic, delta-1. (982 aa)
	Grik3	Glutamate receptor ionotropic, kainate 3 isoform X1. (919 aa)
	Grin3a	Glutamate receptor ionotropic, NMDA 3A isoform X1. (1134 aa)

Your Current Organism:

Dipodomys ordii

NCBI taxonomy Id: 10020
Other names: D. ordii

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Gria1	Gria2	ENSDORP00000001966	ENSDORP00000004118	Glutamate receptor 1 isoform X2.	Glutamate receptor 2.	0.995
Gria1	Gria3	ENSDORP00000001966	ENSDORP00000003261	Glutamate receptor 1 isoform X2.	Glutamate receptor 3 isoform X2.	0.995
Gria1	Grid1	ENSDORP00000001966	ENSDORP00000011570	Glutamate receptor 1 isoform X2.	Glutamate receptor ionotropic, delta-1.	0.585
Gria1	Grid2	ENSDORP00000001966	ENSDORP00000011007	Glutamate receptor 1 isoform X2.	Glutamate receptor ionotropic, delta-2 isoform X1.	0.619
Gria1	Grik1	ENSDORP00000001966	ENSDORP00000009514	Glutamate receptor 1 isoform X2.	Glutamate receptor ionotropic, kainate 1 isoform X1.	0.534
Gria1	Grik2	ENSDORP00000001966	ENSDORP00000018248	Glutamate receptor 1 isoform X2.	Glutamate receptor ionotropic, kainate 2 isoform X1.	0.701
Gria1	Grik3	ENSDORP00000001966	ENSDORP00000011280	Glutamate receptor 1 isoform X2.	Glutamate receptor ionotropic, kainate 3 isoform X1.	0.561
Gria1	Grik4	ENSDORP00000001966	ENSDORP00000008979	Glutamate receptor 1 isoform X2.	Glutamate receptor ionotropic, kainate 4.	0.569
Gria1	Grik5	ENSDORP00000001966	ENSDORP00000016900	Glutamate receptor 1 isoform X2.	Glutamate receptor ionotropic, kainate 5.	0.555
Gria1	Grin1	ENSDORP00000001966	ENSDORP00000022623	Glutamate receptor 1 isoform X2.	LOW QUALITY PROTEIN: glutamate receptor ionotropic, NMDA 1.	0.846
Gria1	Grin2a	ENSDORP00000001966	ENSDORP00000010822	Glutamate receptor 1 isoform X2.	Glutamate receptor ionotropic, NMDA 2A.	0.884
Gria1	Grin2b	ENSDORP00000001966	ENSDORP00000001455	Glutamate receptor 1 isoform X2.	Glutamate receptor ionotropic, NMDA 2B.	0.824
Gria1	Grin2c	ENSDORP00000001966	ENSDORP00000004973	Glutamate receptor 1 isoform X2.	Glutamate receptor ionotropic, NMDA 2C.	0.847
Gria1	Grin3a	ENSDORP00000001966	ENSDORP00000011253	Glutamate receptor 1 isoform X2.	Glutamate receptor ionotropic, NMDA 3A isoform X1.	0.674
Gria1	Grin3b	ENSDORP00000001966	ENSDORP00000026203	Glutamate receptor 1 isoform X2.	Glutamate receptor ionotropic, NMDA 3B; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.577
Gria2	Gria1	ENSDORP00000004118	ENSDORP00000001966	Glutamate receptor 2.	Glutamate receptor 1 isoform X2.	0.995
Gria2	Gria3	ENSDORP00000004118	ENSDORP00000003261	Glutamate receptor 2.	Glutamate receptor 3 isoform X2.	0.998
Gria2	Grid1	ENSDORP00000004118	ENSDORP00000011570	Glutamate receptor 2.	Glutamate receptor ionotropic, delta-1.	0.768
Gria2	Grid2	ENSDORP00000004118	ENSDORP00000011007	Glutamate receptor 2.	Glutamate receptor ionotropic, delta-2 isoform X1.	0.697
Gria2	Grik1	ENSDORP00000004118	ENSDORP00000009514	Glutamate receptor 2.	Glutamate receptor ionotropic, kainate 1 isoform X1.	0.544