(16 nodes) GRAM domain network (Dipodomys ordii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Gramd2	GRAM domain-containing protein 2 isoform X1. (309 aa)
	Tbc1d9b	TBC1 domain family member 9B. (1073 aa)
	Tbc1d8	TBC1 domain family member 8. (1139 aa)
	Gramd1b	GRAM domain-containing protein 1B isoform X2. (725 aa)
	Wbp2nl	Postacrosomal sheath WW domain-binding protein. (348 aa)
	Mtm1	Myotubularin isoform X1. (603 aa)
	Mtmr2	Myotubularin-related protein 2 isoform X1. (643 aa)
	Tbc1d8b	TBC1 domain family member 8B. (1064 aa)
	Tbc1d9	TBC1 domain family member 9 isoform X1. (1241 aa)
	Gramd3	GRAM domain-containing protein 3. (269 aa)
	Sbf2	Myotubularin-related protein 13. (740 aa)
	Nsmaf	Protein FAN. (920 aa)
	Wbp2	WW domain-binding protein 2. (237 aa)
	Mtmr1	Myotubularin-related protein 1. (687 aa)
	Gramd1a	GRAM domain-containing protein 1A. (161 aa)
	Sbf1	Myotubularin-related protein 5. (1875 aa)

Your Current Organism:

Dipodomys ordii

NCBI taxonomy Id: 10020
Other names: D. ordii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Gramd1a	Gramd1b	ENSDORP00000010478	ENSDORP00000019625	GRAM domain-containing protein 1A.	GRAM domain-containing protein 1B isoform X2.	0.555
Gramd1a	Gramd3	ENSDORP00000010478	ENSDORP00000005364	GRAM domain-containing protein 1A.	GRAM domain-containing protein 3.	0.559
Gramd1b	Gramd1a	ENSDORP00000019625	ENSDORP00000010478	GRAM domain-containing protein 1B isoform X2.	GRAM domain-containing protein 1A.	0.555
Gramd1b	Gramd2	ENSDORP00000019625	ENSDORP00000011560	GRAM domain-containing protein 1B isoform X2.	GRAM domain-containing protein 2 isoform X1.	0.416
Gramd1b	Gramd3	ENSDORP00000019625	ENSDORP00000005364	GRAM domain-containing protein 1B isoform X2.	GRAM domain-containing protein 3.	0.658
Gramd2	Gramd1b	ENSDORP00000011560	ENSDORP00000019625	GRAM domain-containing protein 2 isoform X1.	GRAM domain-containing protein 1B isoform X2.	0.416
Gramd2	Gramd3	ENSDORP00000011560	ENSDORP00000005364	GRAM domain-containing protein 2 isoform X1.	GRAM domain-containing protein 3.	0.472
Gramd3	Gramd1a	ENSDORP00000005364	ENSDORP00000010478	GRAM domain-containing protein 3.	GRAM domain-containing protein 1A.	0.559
Gramd3	Gramd1b	ENSDORP00000005364	ENSDORP00000019625	GRAM domain-containing protein 3.	GRAM domain-containing protein 1B isoform X2.	0.658
Gramd3	Gramd2	ENSDORP00000005364	ENSDORP00000011560	GRAM domain-containing protein 3.	GRAM domain-containing protein 2 isoform X1.	0.472
Mtm1	Mtmr1	ENSDORP00000026914	ENSDORP00000010169	Myotubularin isoform X1.	Myotubularin-related protein 1.	0.851
Mtm1	Mtmr2	ENSDORP00000026914	ENSDORP00000000971	Myotubularin isoform X1.	Myotubularin-related protein 2 isoform X1.	0.856
Mtm1	Sbf1	ENSDORP00000026914	ENSDORP00000013642	Myotubularin isoform X1.	Myotubularin-related protein 5.	0.773
Mtm1	Sbf2	ENSDORP00000026914	ENSDORP00000005886	Myotubularin isoform X1.	Myotubularin-related protein 13.	0.815
Mtmr1	Mtm1	ENSDORP00000010169	ENSDORP00000026914	Myotubularin-related protein 1.	Myotubularin isoform X1.	0.851
Mtmr1	Mtmr2	ENSDORP00000010169	ENSDORP00000000971	Myotubularin-related protein 1.	Myotubularin-related protein 2 isoform X1.	0.912
Mtmr1	Sbf1	ENSDORP00000010169	ENSDORP00000013642	Myotubularin-related protein 1.	Myotubularin-related protein 5.	0.792
Mtmr1	Sbf2	ENSDORP00000010169	ENSDORP00000005886	Myotubularin-related protein 1.	Myotubularin-related protein 13.	0.787
Mtmr2	Mtm1	ENSDORP00000000971	ENSDORP00000026914	Myotubularin-related protein 2 isoform X1.	Myotubularin isoform X1.	0.856
Mtmr2	Mtmr1	ENSDORP00000000971	ENSDORP00000010169	Myotubularin-related protein 2 isoform X1.	Myotubularin-related protein 1.	0.912