(3 nodes) Small-subunit processome, Utp12 network (Dipodomys ordii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Wdr43	LOW QUALITY PROTEIN: WD repeat-containing protein 43. (662 aa)
	Wdr3	WD repeat-containing protein 3 isoform X2. (951 aa)
	Pwp2	Periodic tryptophan protein 2 homolog. (897 aa)

Your Current Organism:

Dipodomys ordii

NCBI taxonomy Id: 10020
Other names: D. ordii

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same PNG format, but at higher resolution

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Pwp2	Wdr3	ENSDORP00000002832	ENSDORP00000016661	Periodic tryptophan protein 2 homolog.	WD repeat-containing protein 3 isoform X2.	0.999
Pwp2	Wdr43	ENSDORP00000002832	ENSDORP00000023704	Periodic tryptophan protein 2 homolog.	LOW QUALITY PROTEIN: WD repeat-containing protein 43.	0.999
Wdr3	Pwp2	ENSDORP00000016661	ENSDORP00000002832	WD repeat-containing protein 3 isoform X2.	Periodic tryptophan protein 2 homolog.	0.999
Wdr3	Wdr43	ENSDORP00000016661	ENSDORP00000023704	WD repeat-containing protein 3 isoform X2.	LOW QUALITY PROTEIN: WD repeat-containing protein 43.	0.999
Wdr43	Pwp2	ENSDORP00000023704	ENSDORP00000002832	LOW QUALITY PROTEIN: WD repeat-containing protein 43.	Periodic tryptophan protein 2 homolog.	0.999
Wdr43	Wdr3	ENSDORP00000023704	ENSDORP00000016661	LOW QUALITY PROTEIN: WD repeat-containing protein 43.	WD repeat-containing protein 3 isoform X2.	0.999