17 items (Dipodomys ordii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Grin2a	Glutamate receptor ionotropic, NMDA 2A. (1301 aa)
	Grin2b	Glutamate receptor ionotropic, NMDA 2B. (1103 aa)
	Gria1	Glutamate receptor 1 isoform X2. (906 aa)
	Gria3	Glutamate receptor 3 isoform X2. (894 aa)
	Gria2	Glutamate receptor 2. (842 aa)
	Grin2c	Glutamate receptor ionotropic, NMDA 2C. (1021 aa)
	Grik1	Glutamate receptor ionotropic, kainate 1 isoform X1. (926 aa)
	Grik4	Glutamate receptor ionotropic, kainate 4. (765 aa)
	Grik5	Glutamate receptor ionotropic, kainate 5. (985 aa)
	Grik2	Glutamate receptor ionotropic, kainate 2 isoform X1. (908 aa)
	Grin1	LOW QUALITY PROTEIN: glutamate receptor ionotropic, NMDA 1. (926 aa)
	Gria4	Glutamate receptor 4. (193 aa)
	Grin3b	Glutamate receptor ionotropic, NMDA 3B; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (933 aa)
	Grin3a	Glutamate receptor ionotropic, NMDA 3A isoform X1. (1134 aa)
	Grid2	Glutamate receptor ionotropic, delta-2 isoform X1. (977 aa)
	Grid1	Glutamate receptor ionotropic, delta-1. (982 aa)
	Grik3	Glutamate receptor ionotropic, kainate 3 isoform X1. (919 aa)

Your Current Organism:

Dipodomys ordii

NCBI taxonomy Id: 10020
Other names: D. ordii

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Gria1	Gria2	ENSDORP00000001966	ENSDORP00000004118	Glutamate receptor 1 isoform X2.	Glutamate receptor 2.	0.995
Gria1	Gria3	ENSDORP00000001966	ENSDORP00000003261	Glutamate receptor 1 isoform X2.	Glutamate receptor 3 isoform X2.	0.995
Gria1	Grid1	ENSDORP00000001966	ENSDORP00000011570	Glutamate receptor 1 isoform X2.	Glutamate receptor ionotropic, delta-1.	0.585
Gria1	Grid2	ENSDORP00000001966	ENSDORP00000011007	Glutamate receptor 1 isoform X2.	Glutamate receptor ionotropic, delta-2 isoform X1.	0.619
Gria1	Grik1	ENSDORP00000001966	ENSDORP00000009514	Glutamate receptor 1 isoform X2.	Glutamate receptor ionotropic, kainate 1 isoform X1.	0.534
Gria1	Grik2	ENSDORP00000001966	ENSDORP00000018248	Glutamate receptor 1 isoform X2.	Glutamate receptor ionotropic, kainate 2 isoform X1.	0.701
Gria1	Grik3	ENSDORP00000001966	ENSDORP00000011280	Glutamate receptor 1 isoform X2.	Glutamate receptor ionotropic, kainate 3 isoform X1.	0.561
Gria1	Grik4	ENSDORP00000001966	ENSDORP00000008979	Glutamate receptor 1 isoform X2.	Glutamate receptor ionotropic, kainate 4.	0.569
Gria1	Grik5	ENSDORP00000001966	ENSDORP00000016900	Glutamate receptor 1 isoform X2.	Glutamate receptor ionotropic, kainate 5.	0.555
Gria1	Grin1	ENSDORP00000001966	ENSDORP00000022623	Glutamate receptor 1 isoform X2.	LOW QUALITY PROTEIN: glutamate receptor ionotropic, NMDA 1.	0.846
Gria1	Grin2a	ENSDORP00000001966	ENSDORP00000010822	Glutamate receptor 1 isoform X2.	Glutamate receptor ionotropic, NMDA 2A.	0.884
Gria1	Grin2b	ENSDORP00000001966	ENSDORP00000001455	Glutamate receptor 1 isoform X2.	Glutamate receptor ionotropic, NMDA 2B.	0.824
Gria1	Grin2c	ENSDORP00000001966	ENSDORP00000004973	Glutamate receptor 1 isoform X2.	Glutamate receptor ionotropic, NMDA 2C.	0.847
Gria1	Grin3a	ENSDORP00000001966	ENSDORP00000011253	Glutamate receptor 1 isoform X2.	Glutamate receptor ionotropic, NMDA 3A isoform X1.	0.674
Gria1	Grin3b	ENSDORP00000001966	ENSDORP00000026203	Glutamate receptor 1 isoform X2.	Glutamate receptor ionotropic, NMDA 3B; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.577
Gria2	Gria1	ENSDORP00000004118	ENSDORP00000001966	Glutamate receptor 2.	Glutamate receptor 1 isoform X2.	0.995
Gria2	Gria3	ENSDORP00000004118	ENSDORP00000003261	Glutamate receptor 2.	Glutamate receptor 3 isoform X2.	0.998
Gria2	Grid1	ENSDORP00000004118	ENSDORP00000011570	Glutamate receptor 2.	Glutamate receptor ionotropic, delta-1.	0.768
Gria2	Grid2	ENSDORP00000004118	ENSDORP00000011007	Glutamate receptor 2.	Glutamate receptor ionotropic, delta-2 isoform X1.	0.697
Gria2	Grik1	ENSDORP00000004118	ENSDORP00000009514	Glutamate receptor 2.	Glutamate receptor ionotropic, kainate 1 isoform X1.	0.544