39 items (Dipodomys ordii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSDORP00000021758	annotation not available (151 aa)
	ENSDORP00000021714	annotation not available (125 aa)
	LOC106000746	Uncharacterized protein LOC106000746. (154 aa)
	ENSDORP00000020543	annotation not available (125 aa)
	ENSDORP00000020531	annotation not available (125 aa)
	ENSDORP00000020304	annotation not available (160 aa)
	Pik3r1	Phosphatidylinositol 3-kinase regulatory subunit alpha isoform X1. (724 aa)
	ENSDORP00000019940	annotation not available (148 aa)
	ENSDORP00000019787	annotation not available (125 aa)
	LOC106001053	Uncharacterized protein LOC106001053. (126 aa)
	ENSDORP00000018683	annotation not available (148 aa)
	Fcrls	Fc receptor-like protein 2. (495 aa)
	ENSDORP00000017709	annotation not available (94 aa)
	LOC105998330	TCR gamma alternate reading frame protein. (172 aa)
	ENSDORP00000017547	annotation not available (125 aa)
	ENSDORP00000017263	annotation not available (125 aa)
	ENSDORP00000016707	annotation not available (126 aa)
	ENSDORP00000016550	annotation not available (148 aa)
	LOC105996545	Fc receptor-like protein 1 isoform X1. (308 aa)
	Pdpk1	3-phosphoinositide-dependent protein kinase 1 isoform X1. (552 aa)
	Gab2	GRB2-associated-binding protein 2. (608 aa)
	Pik3ca	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit. (1068 aa)
	Ms4a2	High affinity immunoglobulin epsilon receptor subunit beta. (243 aa)
	Pik3cb	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit. (1070 aa)
	Mast3	Microtubule associated serine/threonine kinase 3. (71 aa)
	Shc1	SHC-transforming protein 1 isoform X2. (473 aa)
	Sos1	Son of sevenless homolog 1. (1301 aa)
	Lyn	Tyrosine-protein kinase. (512 aa)
	Syk	Tyrosine-protein kinase. (633 aa)
	Fcer1g	High affinity immunoglobulin epsilon receptor subunit gamma. (69 aa)
	Grb2	Growth factor receptor-bound protein 2. (217 aa)
	ENSDORP00000026390	annotation not available (153 aa)
	ENSDORP00000024385	annotation not available (125 aa)
	ENSDORP00000024326	annotation not available (125 aa)
	ENSDORP00000024064	annotation not available (125 aa)
	ENSDORP00000024059	annotation not available (148 aa)
	Igll1	Immunoglobulin lambda-like polypeptide 5. (213 aa)
	ENSDORP00000023140	annotation not available (164 aa)
	Fcer1a	High affinity immunoglobulin epsilon receptor subunit alpha isoform X1. (250 aa)

Your Current Organism:

Dipodomys ordii

NCBI taxonomy Id: 10020
Other names: D. ordii

Send network to Cytoscape

Export your current network:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSDORP00000016550	ENSDORP00000016707	ENSDORP00000016550	ENSDORP00000016707	annotation not available	annotation not available	0.652
ENSDORP00000016550	ENSDORP00000017709	ENSDORP00000016550	ENSDORP00000017709	annotation not available	annotation not available	0.674
ENSDORP00000016550	ENSDORP00000020304	ENSDORP00000016550	ENSDORP00000020304	annotation not available	annotation not available	0.674
ENSDORP00000016550	ENSDORP00000026390	ENSDORP00000016550	ENSDORP00000026390	annotation not available	annotation not available	0.674
ENSDORP00000016550	Fcer1g	ENSDORP00000016550	ENSDORP00000027892	annotation not available	High affinity immunoglobulin epsilon receptor subunit gamma.	0.427
ENSDORP00000016550	Grb2	ENSDORP00000016550	ENSDORP00000027785	annotation not available	Growth factor receptor-bound protein 2.	0.410
ENSDORP00000016550	LOC106001053	ENSDORP00000016550	ENSDORP00000019727	annotation not available	Uncharacterized protein LOC106001053.	0.651
ENSDORP00000016550	Lyn	ENSDORP00000016550	ENSDORP00000000698	annotation not available	Tyrosine-protein kinase.	0.533
ENSDORP00000016550	Ms4a2	ENSDORP00000016550	ENSDORP00000008239	annotation not available	High affinity immunoglobulin epsilon receptor subunit beta.	0.559
ENSDORP00000016550	Sos1	ENSDORP00000016550	ENSDORP00000002200	annotation not available	Son of sevenless homolog 1.	0.403
ENSDORP00000016707	ENSDORP00000016550	ENSDORP00000016707	ENSDORP00000016550	annotation not available	annotation not available	0.652
ENSDORP00000016707	ENSDORP00000017709	ENSDORP00000016707	ENSDORP00000017709	annotation not available	annotation not available	0.692
ENSDORP00000016707	ENSDORP00000018683	ENSDORP00000016707	ENSDORP00000018683	annotation not available	annotation not available	0.650
ENSDORP00000016707	ENSDORP00000019940	ENSDORP00000016707	ENSDORP00000019940	annotation not available	annotation not available	0.649
ENSDORP00000016707	ENSDORP00000020304	ENSDORP00000016707	ENSDORP00000020304	annotation not available	annotation not available	0.683
ENSDORP00000016707	ENSDORP00000021758	ENSDORP00000016707	ENSDORP00000021758	annotation not available	annotation not available	0.668
ENSDORP00000016707	ENSDORP00000023140	ENSDORP00000016707	ENSDORP00000023140	annotation not available	annotation not available	0.650
ENSDORP00000016707	ENSDORP00000024059	ENSDORP00000016707	ENSDORP00000024059	annotation not available	annotation not available	0.649
ENSDORP00000016707	ENSDORP00000026390	ENSDORP00000016707	ENSDORP00000026390	annotation not available	annotation not available	0.683
ENSDORP00000016707	Fcer1a	ENSDORP00000016707	ENSDORP00000022718	annotation not available	High affinity immunoglobulin epsilon receptor subunit alpha isoform X1.	0.409