STRINGSTRING
Hdac2 Hdac2 Gatad2b Gatad2b Wdr73 Wdr73 Hmg20a Hmg20a Aire Aire Chd3 Chd3 ENSDORP00000009467 ENSDORP00000009467 Brms1 Brms1 Brms1l Brms1l Wdr26 Wdr26 Mbd3 Mbd3 Mta2 Mta2 Suds3 Suds3 Arid4a Arid4a Sap30l Sap30l Mta1 Mta1 Rbbp7 Rbbp7 Gps2 Gps2 Hdac1 Hdac1 Rcor1 Rcor1 Chd5 Chd5 Rbbp4 Rbbp4 Gatad2a Gatad2a ENSDORP00000018862 ENSDORP00000018862 Sap30 Sap30 Rest Rest Phf21a Phf21a Kdm1a Kdm1a Sap18 Sap18 Chd4 Chd4 Arid4b Arid4b ENSDORP00000022774 ENSDORP00000022774 Mta3 Mta3 Hmg20b Hmg20b LOC105996993 LOC105996993 ENSDORP00000027329 ENSDORP00000027329 Rcor2 Rcor2 Rcor3 Rcor3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Hdac2Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (488 aa)
Gatad2bTranscriptional repressor p66-beta isoform X1. (593 aa)
Wdr73WD repeat-containing protein 73. (355 aa)
Hmg20aHigh mobility group protein 20A. (347 aa)
AireAutoimmune regulator. (407 aa)
Chd3chromodomain-helicase-DNA-binding protein 3. (1964 aa)
ENSDORP00000009467annotation not available (260 aa)
Brms1Breast cancer metastasis-suppressor 1. (275 aa)
Brms1lBreast cancer metastasis-suppressor 1-like protein isoform X2. (308 aa)
Wdr26WD repeat-containing protein 26. (464 aa)
Mbd3methyl-CpG-binding domain protein 3 isoform X2. (254 aa)
Mta2Metastasis-associated protein MTA2. (561 aa)
Suds3Sin3 histone deacetylase corepressor complex component SDS3. (304 aa)
Arid4aAT-rich interactive domain-containing protein 4A. (1214 aa)
Sap30lHistone deacetylase complex subunit SAP30L. (186 aa)
Mta1Metastasis-associated protein MTA1. (704 aa)
Rbbp7Histone-binding protein RBBP7. (416 aa)
Gps2G protein pathway suppressor 2. (327 aa)
Hdac1Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (477 aa)
Rcor1REST corepressor 1. (320 aa)
Chd5chromodomain-helicase-DNA-binding protein 5. (1928 aa)
Rbbp4Histone-binding protein RBBP4. (425 aa)
Gatad2aTranscriptional repressor p66-alpha isoform X1. (623 aa)
ENSDORP00000018862annotation not available (27 aa)
Sap30Histone deacetylase complex subunit SAP30. (118 aa)
RestRE1-silencing transcription factor isoform X2. (329 aa)
Phf21aPHD finger protein 21A isoform X1. (636 aa)
Kdm1aLysine-specific histone demethylase; Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me; Belongs to the flavin monoamine oxidase family. (755 aa)
Sap18Histone deacetylase complex subunit SAP18; Component of the SIN3-repressing complex. Enhances the ability of SIN3-HDAC1-mediated transcriptional repression. When tethered to the promoter, it can direct the formation of a repressive complex to core histone proteins. Auxiliary component of the splicing- dependent multiprotein exon junction complex (EJC) deposited at splice junction on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or durin [...] (172 aa)
Chd4chromodomain-helicase-DNA-binding protein 4 isoform X2. (1942 aa)
Arid4bAT-rich interactive domain-containing protein 4B. (1311 aa)
ENSDORP00000022774annotation not available (389 aa)
Mta3Metastasis-associated protein MTA3. (576 aa)
Hmg20bHigh mobility group 20B. (164 aa)
LOC105996993Histone H2A; Belongs to the histone H2A family. (130 aa)
ENSDORP00000027329annotation not available (278 aa)
Rcor2REST corepressor 2. (523 aa)
Rcor3REST corepressor 3. (536 aa)
Your Current Organism:
Dipodomys ordii
NCBI taxonomy Id: 10020
Other names: D. ordii
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