26 items (Dipodomys ordii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Hdac4	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. (1062 aa)
	ENSDORP00000022774	annotation not available (389 aa)
	Rbpjl	Recombining binding protein suppressor of hairless-like protein. (542 aa)
	ENSDORP00000023286	annotation not available (584 aa)
	Hdac9	Histone deacetylase 9 isoform X4. (114 aa)
	ENSDORP00000025871	annotation not available (284 aa)
	Notch1	Notch 1. (2304 aa)
	Hdac1	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (477 aa)
	Notch2	Neurogenic locus notch homolog protein 2. (2322 aa)
	Ncor2	Nuclear receptor corepressor 2. (2240 aa)
	Rbpj	Recombining binding protein suppressor of hairless isoform X1. (526 aa)
	Maml3	Mastermind-like protein 3. (441 aa)
	Hdac11	Histone deacetylase 11. (346 aa)
	Snw1	SNW domain-containing protein 1. (539 aa)
	Hdac3	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (432 aa)
	Ncor1	Nuclear receptor corepressor 1. (1652 aa)
	Hdac2	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (488 aa)
	Hdac8	Histone deacetylase 8. (377 aa)
	Maml2	Mastermind-like protein 2. (861 aa)
	Tbl1xr1	F-box-like/WD repeat-containing protein TBL1XR1. (514 aa)
	Hdac5	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. (1119 aa)
	Kat2b	Histone acetyltransferase KAT2B. (84 aa)
	Mamld1	Mastermind-like domain-containing protein 1. (732 aa)
	Hdac7	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. (950 aa)
	Hdac10	Histone deacetylase 10 isoform X5. (295 aa)
	Maml1	Mastermind-like protein 1. (1021 aa)

Your Current Organism:

Dipodomys ordii

NCBI taxonomy Id: 10020
Other names: D. ordii

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSDORP00000022774	ENSDORP00000023286	ENSDORP00000022774	ENSDORP00000023286	annotation not available	annotation not available	0.567
ENSDORP00000022774	ENSDORP00000025871	ENSDORP00000022774	ENSDORP00000025871	annotation not available	annotation not available	0.649
ENSDORP00000022774	Hdac10	ENSDORP00000022774	ENSDORP00000019827	annotation not available	Histone deacetylase 10 isoform X5.	0.706
ENSDORP00000022774	Hdac11	ENSDORP00000022774	ENSDORP00000009107	annotation not available	Histone deacetylase 11.	0.595
ENSDORP00000022774	Hdac2	ENSDORP00000022774	ENSDORP00000012520	annotation not available	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.988
ENSDORP00000022774	Hdac3	ENSDORP00000022774	ENSDORP00000011840	annotation not available	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.639
ENSDORP00000022774	Hdac4	ENSDORP00000022774	ENSDORP00000021858	annotation not available	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	0.732
ENSDORP00000022774	Hdac5	ENSDORP00000022774	ENSDORP00000015416	annotation not available	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	0.782
ENSDORP00000022774	Hdac7	ENSDORP00000022774	ENSDORP00000019636	annotation not available	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	0.720
ENSDORP00000022774	Hdac8	ENSDORP00000022774	ENSDORP00000012792	annotation not available	Histone deacetylase 8.	0.478
ENSDORP00000022774	Hdac9	ENSDORP00000022774	ENSDORP00000023705	annotation not available	Histone deacetylase 9 isoform X4.	0.685
ENSDORP00000022774	Kat2b	ENSDORP00000022774	ENSDORP00000016823	annotation not available	Histone acetyltransferase KAT2B.	0.671
ENSDORP00000022774	Ncor1	ENSDORP00000022774	ENSDORP00000011934	annotation not available	Nuclear receptor corepressor 1.	0.951
ENSDORP00000022774	Ncor2	ENSDORP00000022774	ENSDORP00000005396	annotation not available	Nuclear receptor corepressor 2.	0.949
ENSDORP00000022774	Notch1	ENSDORP00000022774	ENSDORP00000026869	annotation not available	Notch 1.	0.428
ENSDORP00000022774	Rbpj	ENSDORP00000022774	ENSDORP00000005947	annotation not available	Recombining binding protein suppressor of hairless isoform X1.	0.887
ENSDORP00000022774	Rbpjl	ENSDORP00000022774	ENSDORP00000022950	annotation not available	Recombining binding protein suppressor of hairless-like protein.	0.853
ENSDORP00000022774	Snw1	ENSDORP00000022774	ENSDORP00000011640	annotation not available	SNW domain-containing protein 1.	0.567
ENSDORP00000022774	Tbl1xr1	ENSDORP00000022774	ENSDORP00000015297	annotation not available	F-box-like/WD repeat-containing protein TBL1XR1.	0.916
ENSDORP00000023286	ENSDORP00000022774	ENSDORP00000023286	ENSDORP00000022774	annotation not available	annotation not available	0.567