STRINGSTRING
Ubb Ubb Ddb1 Ddb1 Cetn2 Cetn2 Pole2 Pole2 Atad5 Atad5 Ercc4 Ercc4 Ccnh Ccnh Pole Pole Xpc Xpc Ubc Ubc Ino80c Ino80c Parp2 Parp2 Pias1 Pias1 Gps1 Gps1 Vwa5a Vwa5a Ino80d Ino80d Rpa2 Rpa2 Gtf2h1 Gtf2h1 Ercc3 Ercc3 ENSDORP00000004761 ENSDORP00000004761 Rcbtb1 Rcbtb1 Parp1 Parp1 Pold2 Pold2 Rpap3 Rpap3 Rps27a Rps27a Wdr76 Wdr76 Cops2 Cops2 Rnf111 Rnf111 Rad23b Rad23b Cetn3 Cetn3 Actl6a Actl6a Ddb2 Ddb2 Polk Polk Actr8 Actr8 Vwa5b2 Vwa5b2 Ercc1 Ercc1 Ercc2 Ercc2 Pold3 Pold3 Actr5 Actr5 Usp45 Usp45 Cul4a Cul4a Rad23a Rad23a Pole4 Pole4 Ino80 Ino80 Yy2 Yy2 Cops3 Cops3 Rfc5 Rfc5 Mcrs1 Mcrs1 Cul4b Cul4b Rfc2 Rfc2 Meiob Meiob Cops8 Cops8 Chd1l Chd1l Xpa Xpa Vtcn1 Vtcn1 Rcbtb2 Rcbtb2 Pold1 Pold1 Ruvbl1 Ruvbl1 Cops5 Cops5 Cops7b Cops7b Rbx1 Rbx1 Ino80b Ino80b Wbp1 Wbp1 ENSDORP00000016182 ENSDORP00000016182 Nfatc2ip Nfatc2ip ENSDORP00000017128 ENSDORP00000017128 Gtf2h2 Gtf2h2 Ube2n Ube2n Gtf2h5 Gtf2h5 LOC106002211 LOC106002211 Pole3 Pole3 Cops7a Cops7a Rfc3 Rfc3 Tfpt Tfpt ENSDORP00000018748 ENSDORP00000018748 Gtf2h3 Gtf2h3 Nfrkb Nfrkb Cdk7 Cdk7 ENSDORP00000019733 ENSDORP00000019733 Gm36028 Gm36028 Ube2v2 Ube2v2 ENSDORP00000020658 ENSDORP00000020658 Ino80e Ino80e Kxd1 Kxd1 LOC105993014 LOC105993014 Cops4 Cops4 ENSDORP00000020939 ENSDORP00000020939 Pias3 Pias3 Rfc4 Rfc4 Kctd2 Kctd2 ENSDORP00000021793 ENSDORP00000021793 Pcna Pcna Uba52 Uba52 Ube2i Ube2i Cops6 Cops6 LOC105986631 LOC105986631 LOC105988088 LOC105988088 LOC106001870 LOC106001870 LOC105993766 LOC105993766 Sumo2 Sumo2 ENSDORP00000024466 ENSDORP00000024466 Mnat1 Mnat1 Pold4 Pold4 Sumo3 Sumo3 ENSDORP00000025047 ENSDORP00000025047 Sumo1 Sumo1 Rpa1 Rpa1 ENSDORP00000025309 ENSDORP00000025309 LOC105985012 LOC105985012 ENSDORP00000026225 ENSDORP00000026225 Yy2-2 Yy2-2 LOC105997812 LOC105997812 LOC105983409 LOC105983409 ENSDORP00000027189 ENSDORP00000027189 ENSDORP00000027628 ENSDORP00000027628 Rfc1 Rfc1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ubbpolyubiquitin-B. (155 aa)
Ddb1DNA damage-binding protein 1. (1025 aa)
Cetn2Centrin-2. (173 aa)
Pole2DNA polymerase epsilon subunit 2. (500 aa)
Atad5LOW QUALITY PROTEIN: ATPase family AAA domain-containing protein 5. (1786 aa)
Ercc4DNA repair endonuclease XPF. (784 aa)
Ccnhcyclin-H isoform X1; Belongs to the cyclin family. (323 aa)
PoleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2282 aa)
XpcDNA repair protein complementing XP-C cells. (893 aa)
Ubcpolyubiquitin-C. (153 aa)
Ino80cINO80 complex subunit C. (137 aa)
Parp2Poly [ADP-ribose] polymerase. (546 aa)
Pias1E3 SUMO-protein ligase PIAS1. (647 aa)
Gps1COP9 signalosome complex subunit 1 isoform X1. (476 aa)
Vwa5aVon Willebrand factor A domain-containing protein 5A. (738 aa)
Ino80dINO80 complex subunit D. (867 aa)
Rpa2Replication protein A 32 kDa subunit isoform X1. (255 aa)
Gtf2h1General transcription factor IIH subunit 1 isoform X2. (552 aa)
Ercc3TFIIH basal transcription factor complex helicase XPB subunit isoform X2. (779 aa)
ENSDORP00000004761annotation not available (64 aa)
Rcbtb1RCC1 and BTB domain-containing protein 1. (323 aa)
Parp1Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1000 aa)
Pold2DNA polymerase delta subunit 2. (469 aa)
Rpap3RNA polymerase II-associated protein 3. (530 aa)
Rps27aubiquitin-40S ribosomal protein S27a. (156 aa)
Wdr76WD repeat-containing protein 76; Specifically binds 5-hydroxymethylcytosine (5hmC), suggesting that it acts as a specific reader of 5hmC. Belongs to the WD repeat DDB2/WDR76 family. (215 aa)
Cops2COP9 signalosome complex subunit 2. (405 aa)
Rnf111E3 ubiquitin-protein ligase Arkadia isoform X3. (991 aa)
Rad23bUV excision repair protein RAD23 homolog B. (390 aa)
Cetn3Centrin-3 isoform X1. (171 aa)
Actl6aActin-like protein 6A; Belongs to the actin family. (429 aa)
Ddb2DNA damage-binding protein 2 isoform X1. (428 aa)
PolkDNA polymerase kappa isoform X1. (546 aa)
Actr8Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily. (624 aa)
Vwa5b2Von Willebrand factor A domain-containing protein 5B2. (1255 aa)
Ercc1DNA excision repair protein ERCC-1 isoform X2. (298 aa)
Ercc2TFIIH basal transcription factor complex helicase XPD subunit isoform X1. (764 aa)
Pold3DNA polymerase delta subunit 3. (463 aa)
Actr5Actin-related protein 5; Belongs to the actin family. (606 aa)
Usp45Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family. (698 aa)
Cul4acullin-4A; Belongs to the cullin family. (594 aa)
Rad23aUV excision repair protein RAD23 homolog A isoform X1. (364 aa)
Pole4DNA polymerase epsilon subunit 4. (118 aa)
Ino80DNA helicase INO80. (1011 aa)
Yy2YY2 transcription factor. (347 aa)
Cops3COP9 signalosome complex subunit 3. (376 aa)
Rfc5Replication factor C subunit 5. (332 aa)
Mcrs1Microspherule protein 1 isoform X2. (450 aa)
Cul4bcullin-4B; Belongs to the cullin family. (871 aa)
Rfc2Replication factor C subunit 2. (324 aa)
MeiobMeiosis-specific with OB domain-containing protein. (419 aa)
Cops8COP9 signalosome complex subunit 8. (209 aa)
Chd1lchromodomain-helicase-DNA-binding protein 1-like isoform X1. (901 aa)
XpaDNA repair protein complementing XP-A cells. (268 aa)
Vtcn1V-set domain-containing T-cell activation inhibitor 1. (278 aa)
Rcbtb2RCC1 and BTB domain-containing protein 2 isoform X1. (538 aa)
Pold1DNA polymerase. (1120 aa)
Ruvbl1RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (414 aa)
Cops5COP9 signalosome complex subunit 5 isoform X1. (334 aa)
Cops7bCOP9 signalosome complex subunit 7b. (245 aa)
Rbx1E3 ubiquitin-protein ligase RBX1. (117 aa)
Ino80bINO80 complex subunit B. (372 aa)
Wbp1WW domain-binding protein 1. (302 aa)
ENSDORP00000016182annotation not available (161 aa)
Nfatc2ipNFATC2-interacting protein. (137 aa)
ENSDORP00000017128annotation not available (72 aa)
Gtf2h2General transcription factor II H, polypeptide 2. (356 aa)
Ube2nUbiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family. (152 aa)
Gtf2h5General transcription factor IIH subunit 5. (71 aa)
LOC106002211Small ubiquitin-related modifier. (89 aa)
Pole3DNA polymerase epsilon subunit 3. (147 aa)
Cops7aCOP9 signalosome complex subunit 7a. (79 aa)
Rfc3Replication factor C subunit 3. (366 aa)
TfptTCF3 fusion partner. (166 aa)
ENSDORP00000018748annotation not available (67 aa)
Gtf2h3General transcription factor IIH subunit 3 isoform X1. (309 aa)
NfrkbNuclear factor related to kappa-B-binding protein. (206 aa)
Cdk7Cyclin-dependent kinase 7. (243 aa)
ENSDORP00000019733annotation not available (100 aa)
Gm36028Butyrophilin subfamily 2 member A2-like. (294 aa)
Ube2v2Ubiquitin-conjugating enzyme E2 variant 2. (145 aa)
ENSDORP00000020658annotation not available (108 aa)
Ino80eINO80 complex subunit E isoform X2. (243 aa)
Kxd1kxDL motif-containing protein 1 isoform X2. (183 aa)
LOC105993014ubiquitin-40S ribosomal protein S27a pseudogene. (147 aa)
Cops4COP9 signalosome complex subunit 4 isoform X1. (406 aa)
ENSDORP00000020939annotation not available (350 aa)
Pias3E3 SUMO-protein ligase PIAS3 isoform X2. (638 aa)
Rfc4Replication factor C subunit 4 isoform X1. (97 aa)
Kctd2BTB/POZ domain-containing protein KCTD2. (246 aa)
ENSDORP00000021793annotation not available (71 aa)
PcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (261 aa)
Uba52ubiquitin-60S ribosomal protein L40. (128 aa)
Ube2iSUMO-conjugating enzyme UBC9; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
Cops6COP9 signalosome complex subunit 6. (297 aa)
LOC105986631Ubiquitin-like. (77 aa)
LOC105988088Small ubiquitin-related modifier. (95 aa)
LOC106001870Small ubiquitin-related modifier 2-like. (100 aa)
LOC105993766Uncharacterized protein LOC105993766. (95 aa)
Sumo2Small ubiquitin-related modifier. (95 aa)
ENSDORP00000024466annotation not available (547 aa)
Mnat1CDK-activating kinase assembly factor MAT1. (281 aa)
Pold4DNA polymerase delta subunit 4 isoform X2. (106 aa)
Sumo3Small ubiquitin-related modifier 3. (118 aa)
ENSDORP00000025047annotation not available (79 aa)
Sumo1Small ubiquitin-related modifier 1. (83 aa)
Rpa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (616 aa)
ENSDORP00000025309annotation not available (238 aa)
LOC105985012Small ubiquitin-related modifier 2-like. (80 aa)
ENSDORP00000026225annotation not available (75 aa)
Yy2-2Transcription factor YY2. (168 aa)
LOC105997812LOW QUALITY PROTEIN: uncharacterized protein LOC105997812. (91 aa)
LOC105983409Small ubiquitin-related modifier 2-like. (74 aa)
ENSDORP00000027189annotation not available (164 aa)
ENSDORP00000027628annotation not available (72 aa)
Rfc1Replication factor C subunit 1. (1119 aa)
Your Current Organism:
Dipodomys ordii
NCBI taxonomy Id: 10020
Other names: D. ordii
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