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Pole2 Pole2 Polr2c Polr2c Ddb1 Ddb1 Atad5 Atad5 Polr2e Polr2e Tcea2 Tcea2 Ccnh Ccnh Pole Pole Uvssa Uvssa Hmgn2 Hmgn2 Polr2i Polr2i Ercc6 Ercc6 Ubc Ubc Nrde2 Nrde2 Rpa2 Rpa2 Gtf2h1 Gtf2h1 Ercc3 Ercc3 ENSDORP00000004761 ENSDORP00000004761 Ppie Ppie Rcbtb1 Rcbtb1 Pold2 Pold2 Xrcc1 Xrcc1 Rps27a Rps27a Isy1 Isy1 Prpf19 Prpf19 Ercc8 Ercc8 Tcea3 Tcea3 Polk Polk Ercc2 Ercc2 Pold3 Pold3 Xab2 Xab2 Cul4a Cul4a Polr2b Polr2b Ep300 Ep300 Pole4 Pole4 Rfc5 Rfc5 Cul4b Cul4b Rfc2 Rfc2 Usp7 Usp7 Meiob Meiob Znf830 Znf830 Lig3 Lig3 Rcbtb2 Rcbtb2 Pold1 Pold1 Spocd1 Spocd1 Rbx1 Rbx1 Aqr Aqr Polr2g Polr2g Usp40 Usp40 Gtf2h2 Gtf2h2 ENSDORP00000017361 ENSDORP00000017361 Hmgn1 Hmgn1 Gtf2h5 Gtf2h5 Polr2k Polr2k Pole3 Pole3 Phf3 Phf3 Rfc3 Rfc3 Gtf2h3 Gtf2h3 Tcea1 Tcea1 ENSDORP00000019529 ENSDORP00000019529 Cdk7 Cdk7 ENSDORP00000019733 ENSDORP00000019733 Polr2d Polr2d LOC106001311 LOC106001311 Kxd1 Kxd1 LOC105993014 LOC105993014 Upk3bl Upk3bl Rfc4 Rfc4 ENSDORP00000021793 ENSDORP00000021793 Pcna Pcna Uba52 Uba52 ENSDORP00000022339 ENSDORP00000022339 LOC105986631 LOC105986631 Ubb Ubb ENSDORP00000023871 ENSDORP00000023871 Polr2j Polr2j ENSDORP00000024466 ENSDORP00000024466 Mnat1 Mnat1 Polr2h Polr2h Tceanc2 Tceanc2 Pold4 Pold4 Rpa1 Rpa1 Polr2f Polr2f Polr2a Polr2a ENSDORP00000027189 ENSDORP00000027189 Lig1 Lig1 Phf3-2 Phf3-2 Rfc1 Rfc1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Pole2DNA polymerase epsilon subunit 2. (500 aa)
Polr2cDNA-directed RNA polymerase II subunit RPB3. (275 aa)
Ddb1DNA damage-binding protein 1. (1025 aa)
Atad5LOW QUALITY PROTEIN: ATPase family AAA domain-containing protein 5. (1786 aa)
Polr2eDNA-directed RNA polymerases I, II, and III subunit RPABC1. (210 aa)
Tcea2Transcription elongation factor A protein 2. (299 aa)
Ccnhcyclin-H isoform X1; Belongs to the cyclin family. (323 aa)
PoleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2282 aa)
UvssaUV-stimulated scaffold protein A. (679 aa)
Hmgn2High mobility group nucleosomal binding domain 2. (96 aa)
Polr2iDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (125 aa)
Ercc6DNA excision repair protein ERCC-6. (1480 aa)
Ubcpolyubiquitin-C. (153 aa)
Nrde2Protein NRDE2 homolog isoform X1. (933 aa)
Rpa2Replication protein A 32 kDa subunit isoform X1. (255 aa)
Gtf2h1General transcription factor IIH subunit 1 isoform X2. (552 aa)
Ercc3TFIIH basal transcription factor complex helicase XPB subunit isoform X2. (779 aa)
ENSDORP00000004761annotation not available (64 aa)
PpiePeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (301 aa)
Rcbtb1RCC1 and BTB domain-containing protein 1. (323 aa)
Pold2DNA polymerase delta subunit 2. (469 aa)
Xrcc1DNA repair protein XRCC1. (642 aa)
Rps27aubiquitin-40S ribosomal protein S27a. (156 aa)
Isy1pre-mRNA-splicing factor ISY1 homolog. (277 aa)
Prpf19pre-mRNA-processing factor 19. (504 aa)
Ercc8DNA excision repair protein ERCC-8. (396 aa)
Tcea3Transcription elongation factor A protein 3 isoform X1. (349 aa)
PolkDNA polymerase kappa isoform X1. (546 aa)
Ercc2TFIIH basal transcription factor complex helicase XPD subunit isoform X1. (764 aa)
Pold3DNA polymerase delta subunit 3. (463 aa)
Xab2pre-mRNA-splicing factor SYF1 isoform X1. (855 aa)
Cul4acullin-4A; Belongs to the cullin family. (594 aa)
Polr2bDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1047 aa)
Ep300Histone acetyltransferase p300. (2345 aa)
Pole4DNA polymerase epsilon subunit 4. (118 aa)
Rfc5Replication factor C subunit 5. (332 aa)
Cul4bcullin-4B; Belongs to the cullin family. (871 aa)
Rfc2Replication factor C subunit 2. (324 aa)
Usp7Ubiquitin carboxyl-terminal hydrolase 7; Belongs to the peptidase C19 family. (891 aa)
MeiobMeiosis-specific with OB domain-containing protein. (419 aa)
Znf830Zinc finger protein 830. (368 aa)
Lig3DNA ligase. (864 aa)
Rcbtb2RCC1 and BTB domain-containing protein 2 isoform X1. (538 aa)
Pold1DNA polymerase. (1120 aa)
Spocd1SPOC domain-containing protein 1. (540 aa)
Rbx1E3 ubiquitin-protein ligase RBX1. (117 aa)
AqrRNA helicase aquarius; Intron-binding spliceosomal protein required to link pre-mRNA splicing and snoRNP (small nucleolar ribonucleoprotein) biogenesis. Plays a key role in position-dependent assembly of intron-encoded box C/D small snoRNP, splicing being required for snoRNP assembly. May act by helping the folding of the snoRNA sequence. Binds to intron of pre- mRNAs in a sequence-independent manner, contacting the region between snoRNA and the branchpoint of introns (40 nucleotides upstream of the branchpoint) during the late stages of splicing. (1464 aa)
Polr2gDNA-directed RNA polymerase II subunit RPB7. (118 aa)
Usp40Ubiquitin carboxyl-terminal hydrolase 40; Belongs to the peptidase C19 family. (93 aa)
Gtf2h2General transcription factor II H, polypeptide 2. (356 aa)
ENSDORP00000017361annotation not available (108 aa)
Hmgn1Non-histone chromosomal protein HMG-14. (94 aa)
Gtf2h5General transcription factor IIH subunit 5. (71 aa)
Polr2kDNA-directed RNA polymerases I, II, and III subunit RPABC4. (58 aa)
Pole3DNA polymerase epsilon subunit 3. (147 aa)
Phf3PHD finger protein 3 isoform X2. (111 aa)
Rfc3Replication factor C subunit 3. (366 aa)
Gtf2h3General transcription factor IIH subunit 3 isoform X1. (309 aa)
Tcea1Transcription elongation factor A protein 1. (309 aa)
ENSDORP00000019529annotation not available (105 aa)
Cdk7Cyclin-dependent kinase 7. (243 aa)
ENSDORP00000019733annotation not available (100 aa)
Polr2dDNA-directed RNA polymerase II subunit RPB4. (142 aa)
LOC106001311DNA-directed RNA polymerase II subunit RPB7. (172 aa)
Kxd1kxDL motif-containing protein 1 isoform X2. (183 aa)
LOC105993014ubiquitin-40S ribosomal protein S27a pseudogene. (147 aa)
Upk3blUroplakin-3b-like protein. (245 aa)
Rfc4Replication factor C subunit 4 isoform X1. (97 aa)
ENSDORP00000021793annotation not available (71 aa)
PcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (261 aa)
Uba52ubiquitin-60S ribosomal protein L40. (128 aa)
ENSDORP00000022339annotation not available (85 aa)
LOC105986631Ubiquitin-like. (77 aa)
Ubbpolyubiquitin-B. (155 aa)
ENSDORP00000023871annotation not available (69 aa)
Polr2jDNA-directed RNA polymerase II subunit RPB11-a. (117 aa)
ENSDORP00000024466annotation not available (547 aa)
Mnat1CDK-activating kinase assembly factor MAT1. (281 aa)
Polr2hDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
Tceanc2Transcription elongation factor A N-terminal and central domain-containing protein 2. (208 aa)
Pold4DNA polymerase delta subunit 4 isoform X2. (106 aa)
Rpa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (616 aa)
Polr2fDNA-directed RNA polymerases I, II, and III subunit RPABC2. (127 aa)
Polr2aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1970 aa)
ENSDORP00000027189annotation not available (164 aa)
Lig1DNA ligase. (912 aa)
Phf3-2PHD finger protein 3 isoform X1. (154 aa)
Rfc1Replication factor C subunit 1. (1119 aa)
Your Current Organism:
Dipodomys ordii
NCBI taxonomy Id: 10020
Other names: D. ordii
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