12 items (Dipodomys ordii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Il15ra	Interleukin-15 receptor subunit alpha. (231 aa)
	Jak3	Tyrosine-protein kinase JAK3. (999 aa)
	Shc1	SHC-transforming protein 1 isoform X2. (473 aa)
	ENSDORP00000002235	annotation not available (390 aa)
	Sos1	Son of sevenless homolog 1. (1301 aa)
	Stat5a	Signal transducer and activator of transcription. (793 aa)
	Sos2	Son of sevenless homolog 2. (1320 aa)
	Il2rg	Cytokine receptor common subunit gamma. (94 aa)
	Jak1	Tyrosine-protein kinase. (1155 aa)
	Il15	Interleukin; Belongs to the IL-15/IL-21 family. (175 aa)
	Grb2	Growth factor receptor-bound protein 2. (217 aa)
	Stat3	Signal transducer and activator of transcription. (770 aa)

Your Current Organism:

Dipodomys ordii

NCBI taxonomy Id: 10020
Other names: D. ordii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSDORP00000002235	Grb2	ENSDORP00000002235	ENSDORP00000027785	annotation not available	Growth factor receptor-bound protein 2.	0.457
ENSDORP00000002235	Il15	ENSDORP00000002235	ENSDORP00000013306	annotation not available	Interleukin; Belongs to the IL-15/IL-21 family.	0.504
ENSDORP00000002235	Il15ra	ENSDORP00000002235	ENSDORP00000027679	annotation not available	Interleukin-15 receptor subunit alpha.	0.465
ENSDORP00000002235	Il2rg	ENSDORP00000002235	ENSDORP00000019200	annotation not available	Cytokine receptor common subunit gamma.	0.804
ENSDORP00000002235	Jak1	ENSDORP00000002235	ENSDORP00000012658	annotation not available	Tyrosine-protein kinase.	0.932
ENSDORP00000002235	Jak3	ENSDORP00000002235	ENSDORP00000012002	annotation not available	Tyrosine-protein kinase JAK3.	0.928
ENSDORP00000002235	Shc1	ENSDORP00000002235	ENSDORP00000003514	annotation not available	SHC-transforming protein 1 isoform X2.	0.499
ENSDORP00000002235	Stat3	ENSDORP00000002235	ENSDORP00000024461	annotation not available	Signal transducer and activator of transcription.	0.867
Grb2	ENSDORP00000002235	ENSDORP00000027785	ENSDORP00000002235	Growth factor receptor-bound protein 2.	annotation not available	0.457
Grb2	Il15	ENSDORP00000027785	ENSDORP00000013306	Growth factor receptor-bound protein 2.	Interleukin; Belongs to the IL-15/IL-21 family.	0.660
Grb2	Il15ra	ENSDORP00000027785	ENSDORP00000027679	Growth factor receptor-bound protein 2.	Interleukin-15 receptor subunit alpha.	0.501
Grb2	Il2rg	ENSDORP00000027785	ENSDORP00000019200	Growth factor receptor-bound protein 2.	Cytokine receptor common subunit gamma.	0.437
Grb2	Jak1	ENSDORP00000027785	ENSDORP00000012658	Growth factor receptor-bound protein 2.	Tyrosine-protein kinase.	0.796
Grb2	Jak3	ENSDORP00000027785	ENSDORP00000012002	Growth factor receptor-bound protein 2.	Tyrosine-protein kinase JAK3.	0.823
Grb2	Shc1	ENSDORP00000027785	ENSDORP00000003514	Growth factor receptor-bound protein 2.	SHC-transforming protein 1 isoform X2.	0.999
Grb2	Sos1	ENSDORP00000027785	ENSDORP00000002200	Growth factor receptor-bound protein 2.	Son of sevenless homolog 1.	0.997
Grb2	Sos2	ENSDORP00000027785	ENSDORP00000021052	Growth factor receptor-bound protein 2.	Son of sevenless homolog 2.	0.994
Grb2	Stat3	ENSDORP00000027785	ENSDORP00000024461	Growth factor receptor-bound protein 2.	Signal transducer and activator of transcription.	0.772
Grb2	Stat5a	ENSDORP00000027785	ENSDORP00000000283	Growth factor receptor-bound protein 2.	Signal transducer and activator of transcription.	0.485
Il15	ENSDORP00000002235	ENSDORP00000013306	ENSDORP00000002235	Interleukin; Belongs to the IL-15/IL-21 family.	annotation not available	0.504