29 items (Dipodomys ordii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cbx5	Chromobox protein homolog 5. (164 aa)
	Cbx7	Chromobox protein homolog 7. (245 aa)
	Cbx8	Chromobox protein homolog 8 isoform X2. (365 aa)
	Cbx3	Chromobox protein homolog 3. (117 aa)
	ENSDORP00000024620	annotation not available (120 aa)
	LOC105994671	Chromobox protein homolog 3. (173 aa)
	Smarcc1	SWI/SNF complex subunit SMARCC1. (1061 aa)
	Suv39h1	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily. (401 aa)
	Cbx1	Chromobox protein homolog 1 isoform X2. (185 aa)
	ENSDORP00000016447	annotation not available (183 aa)
	Chd5	chromodomain-helicase-DNA-binding protein 5. (1928 aa)
	ENSDORP00000019109	annotation not available (128 aa)
	ENSDORP00000019608	annotation not available (164 aa)
	Chd4	chromodomain-helicase-DNA-binding protein 4 isoform X2. (1942 aa)
	Arid4b	AT-rich interactive domain-containing protein 4B. (1311 aa)
	ENSDORP00000000668	annotation not available (111 aa)
	Smarcc2	SWI/SNF complex subunit SMARCC2. (1178 aa)
	Chd8	Chromodomain-helicase-DNA-binding protein 8; DNA helicase that acts as a chromatin remodeling factor and regulates transcription. Acts as a transcription repressor by remodeling chromatin structure and recruiting histone H1 to target genes. Suppresses p53/TP53-mediated apoptosis by recruiting histone H1 and preventing p53/TP53 transactivation activity. Acts as a negative regulator of Wnt signaling pathway by regulating beta-catenin (CTNNB1) activity. Negatively regulates CTNNB1-targeted gene expression by being recruited specifically to the promoter regions of several CTNNB1 responsive [...] (2478 aa)
	Arid4a	AT-rich interactive domain-containing protein 4A. (1214 aa)
	Msl3	Male-specific lethal 3 homolog isoform X1. (527 aa)
	Chd7	chromodomain-helicase-DNA-binding protein 7 isoform X1. (2995 aa)
	Suv39h2	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily. (399 aa)
	Chd6	chromodomain-helicase-DNA-binding protein 6. (546 aa)
	Cdyl	Chromodomain Y-like protein. (563 aa)
	Chd1	chromodomain-helicase-DNA-binding protein 1 isoform X4. (1713 aa)
	LOC106000651	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily. (423 aa)
	Kat5	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (513 aa)
	Cdyl2	Chromodomain Y-like protein 2. (505 aa)
	Chd3	chromodomain-helicase-DNA-binding protein 3. (1964 aa)

Your Current Organism:

Dipodomys ordii

NCBI taxonomy Id: 10020
Other names: D. ordii

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Arid4a	Arid4b	ENSDORP00000002037	ENSDORP00000022188	AT-rich interactive domain-containing protein 4A.	AT-rich interactive domain-containing protein 4B.	0.734
Arid4a	Chd1	ENSDORP00000002037	ENSDORP00000014892	AT-rich interactive domain-containing protein 4A.	chromodomain-helicase-DNA-binding protein 1 isoform X4.	0.762
Arid4a	Chd3	ENSDORP00000002037	ENSDORP00000010071	AT-rich interactive domain-containing protein 4A.	chromodomain-helicase-DNA-binding protein 3.	0.809
Arid4a	Chd4	ENSDORP00000002037	ENSDORP00000020916	AT-rich interactive domain-containing protein 4A.	chromodomain-helicase-DNA-binding protein 4 isoform X2.	0.809
Arid4a	Chd5	ENSDORP00000002037	ENSDORP00000017407	AT-rich interactive domain-containing protein 4A.	chromodomain-helicase-DNA-binding protein 5.	0.809
Arid4a	Chd6	ENSDORP00000002037	ENSDORP00000022991	AT-rich interactive domain-containing protein 4A.	chromodomain-helicase-DNA-binding protein 6.	0.759
Arid4a	Chd7	ENSDORP00000002037	ENSDORP00000003290	AT-rich interactive domain-containing protein 4A.	chromodomain-helicase-DNA-binding protein 7 isoform X1.	0.759
Arid4a	Chd8	ENSDORP00000002037	ENSDORP00000001923	AT-rich interactive domain-containing protein 4A.	Chromodomain-helicase-DNA-binding protein 8; DNA helicase that acts as a chromatin remodeling factor and regulates transcription. Acts as a transcription repressor by remodeling chromatin structure and recruiting histone H1 to target genes. Suppresses p53/TP53-mediated apoptosis by recruiting histone H1 and preventing p53/TP53 transactivation activity. Acts as a negative regulator of Wnt signaling pathway by regulating beta-catenin (CTNNB1) activity. Negatively regulates CTNNB1-targeted gene expression by being recruited specifically to the promoter regions of several CTNNB1 responsive [...]	0.759
Arid4a	ENSDORP00000024620	ENSDORP00000002037	ENSDORP00000024620	AT-rich interactive domain-containing protein 4A.	annotation not available	0.766
Arid4a	Kat5	ENSDORP00000002037	ENSDORP00000011811	AT-rich interactive domain-containing protein 4A.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.778
Arid4a	LOC106000651	ENSDORP00000002037	ENSDORP00000013428	AT-rich interactive domain-containing protein 4A.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	0.508
Arid4a	Msl3	ENSDORP00000002037	ENSDORP00000003216	AT-rich interactive domain-containing protein 4A.	Male-specific lethal 3 homolog isoform X1.	0.482
Arid4a	Smarcc1	ENSDORP00000002037	ENSDORP00000025850	AT-rich interactive domain-containing protein 4A.	SWI/SNF complex subunit SMARCC1.	0.936
Arid4a	Smarcc2	ENSDORP00000002037	ENSDORP00000001020	AT-rich interactive domain-containing protein 4A.	SWI/SNF complex subunit SMARCC2.	0.936
Arid4a	Suv39h1	ENSDORP00000002037	ENSDORP00000026627	AT-rich interactive domain-containing protein 4A.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	0.508
Arid4a	Suv39h2	ENSDORP00000002037	ENSDORP00000004177	AT-rich interactive domain-containing protein 4A.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	0.508
Arid4b	Arid4a	ENSDORP00000022188	ENSDORP00000002037	AT-rich interactive domain-containing protein 4B.	AT-rich interactive domain-containing protein 4A.	0.734
Arid4b	Chd1	ENSDORP00000022188	ENSDORP00000014892	AT-rich interactive domain-containing protein 4B.	chromodomain-helicase-DNA-binding protein 1 isoform X4.	0.790
Arid4b	Chd3	ENSDORP00000022188	ENSDORP00000010071	AT-rich interactive domain-containing protein 4B.	chromodomain-helicase-DNA-binding protein 3.	0.813
Arid4b	Chd4	ENSDORP00000022188	ENSDORP00000020916	AT-rich interactive domain-containing protein 4B.	chromodomain-helicase-DNA-binding protein 4 isoform X2.	0.809