STRINGSTRING
Rpp38 Rpp38 Brdt Brdt Sbds Sbds Wdr3 Wdr3 Nop10 Nop10 3110040N11Rik 3110040N11Rik ENSDORP00000017050 ENSDORP00000017050 ENSDORP00000017549 ENSDORP00000017549 Wdr36 Wdr36 Brd2 Brd2 Utp6 Utp6 Snu13 Snu13 Imp3 Imp3 Brd4 Brd4 Nmd3 Nmd3 Csnk2a1 Csnk2a1 Znf622 Znf622 ENSDORP00000019435 ENSDORP00000019435 ENSDORP00000019560 ENSDORP00000019560 Wdr75 Wdr75 ENSDORP00000019650 ENSDORP00000019650 Tmem167b Tmem167b Rpp25l Rpp25l Nxt1 Nxt1 Rexo1 Rexo1 ENSDORP00000020880 ENSDORP00000020880 LOC105985881 LOC105985881 Retreg2 Retreg2 ENSDORP00000021284 ENSDORP00000021284 Pop5 Pop5 Cptp Cptp Tmem167a Tmem167a Utp18 Utp18 Wdr43 Wdr43 Adgrd1 Adgrd1 LOC105993916 LOC105993916 Pop1 Pop1 ENSDORP00000024945 ENSDORP00000024945 Gnl3l Gnl3l Ran Ran Nxf1 Nxf1 Rpp25 Rpp25 Xpo1 Xpo1 Dnttip2 Dnttip2 Riok2 Riok2 Rrp7a Rrp7a Tmem223 Tmem223 Rcl1 Rcl1 Rpp30 Rpp30 Arhgap42 Arhgap42 Utp4 Utp4 Nvl Nvl Gnl2 Gnl2 Csnk2b Csnk2b Tmem120a Tmem120a Nop56 Nop56 Xrn1 Xrn1 LOC105985964 LOC105985964 Dkc1 Dkc1 Kri1 Kri1 LOC105994109 LOC105994109 Brd3 Brd3 Pop7 Pop7 Lsg1 Lsg1 Tmem120b Tmem120b Dxo Dxo Tubgcp4 Tubgcp4 Rexo2 Rexo2 Gtpbp4 Gtpbp4 Nxt2 Nxt2 Imp4 Imp4 Eqtn Eqtn Trub1 Trub1 Fcf1 Fcf1 Emg1 Emg1 Utp14a Utp14a Ophn1 Ophn1 Tmem203 Tmem203 Mettl9 Mettl9 Pop4 Pop4 Riok1 Riok1 Vwc2 Vwc2 Tbl3 Tbl3 LOC106001399 LOC106001399 Nat10 Nat10 Retreg3 Retreg3 Nol6 Nol6 Mphosph10 Mphosph10 Gltpd2 Gltpd2 Fbl Fbl Drosha Drosha Mdn1 Mdn1 Xrn2 Xrn2 Heatr1 Heatr1 Utp15 Utp15 Rbm28 Rbm28 Arhgap26 Arhgap26 Nhp2 Nhp2 Pwp2 Pwp2 Bms1 Bms1 Csnk2a2 Csnk2a2 Eif6 Eif6 Retreg1 Retreg1 Efl1 Efl1 ENSDORP00000000639 ENSDORP00000000639 Gnl3 Gnl3 Spata5 Spata5 Nob1 Nob1 Gar1 Gar1 Ak6 Ak6
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Rpp38Ribonuclease P protein subunit p38. (276 aa)
BrdtBromodomain testis-specific protein. (953 aa)
SbdsRibosome maturation protein SBDS. (250 aa)
Wdr3WD repeat-containing protein 3 isoform X2. (951 aa)
Nop10H/ACA ribonucleoprotein complex subunit 3. (64 aa)
3110040N11RikUPF0235 protein C15orf40 homolog. (116 aa)
ENSDORP00000017050annotation not available (130 aa)
ENSDORP00000017549annotation not available (195 aa)
Wdr36WD repeat-containing protein 36 isoform X1. (898 aa)
Brd2Bromodomain-containing protein 2 isoform X1. (801 aa)
Utp6U3 small nucleolar RNA-associated protein 6 homolog. (569 aa)
Snu13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
Imp3U3 small nucleolar ribonucleoprotein protein IMP3. (184 aa)
Brd4Bromodomain-containing protein 4. (146 aa)
Nmd360S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family. (477 aa)
Csnk2a1Casein kinase II subunit alpha; Belongs to the protein kinase superfamily. (391 aa)
Znf622Zinc finger protein 622. (476 aa)
ENSDORP00000019435annotation not available (74 aa)
ENSDORP00000019560annotation not available (89 aa)
Wdr75WD repeat-containing protein 75 isoform X1. (831 aa)
ENSDORP00000019650annotation not available (61 aa)
Tmem167bProtein kish; Involved in the early part of the secretory pathway. (74 aa)
Rpp25lRibonuclease P protein subunit p25-like protein. (163 aa)
Nxt1NTF2-related export protein 1. (140 aa)
Rexo1RNA exonuclease 1 homolog. (1201 aa)
ENSDORP00000020880annotation not available (200 aa)
LOC105985881Ribonuclease P protein subunit p40-like. (363 aa)
Retreg2Protein FAM134A isoform X1. (546 aa)
ENSDORP00000021284annotation not available (297 aa)
Pop5Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. (168 aa)
CptpCeramide-1-phosphate transfer protein. (214 aa)
Tmem167aProtein kish; Involved in the early part of the secretory pathway. (72 aa)
Utp18U3 small nucleolar RNA-associated protein 18 homolog. (464 aa)
Wdr43LOW QUALITY PROTEIN: WD repeat-containing protein 43. (662 aa)
Adgrd1Probable G-protein coupled receptor 133; Belongs to the G-protein coupled receptor 2 family. (853 aa)
LOC105993916U3 small nucleolar RNA-associated protein 14 homolog A-like. (735 aa)
Pop1Ribonucleases P/MRP protein subunit POP1. (994 aa)
ENSDORP00000024945annotation not available (210 aa)
Gnl3lGuanine nucleotide-binding protein-like 3-like protein. (579 aa)
RanGTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family. (175 aa)
Nxf1Nuclear RNA export factor 1. (530 aa)
Rpp25Ribonuclease P protein subunit p25. (199 aa)
Xpo1Exportin-1. (921 aa)
Dnttip2Deoxynucleotidyltransferase terminal-interacting protein 2. (109 aa)
Riok2Serine/threonine-protein kinase RIO2 isoform X1. (538 aa)
Rrp7aRibosomal RNA-processing protein 7 homolog A. (279 aa)
Tmem223Transmembrane protein 223. (202 aa)
Rcl1RNA 3'-terminal phosphate cyclase-like protein isoform X1. (373 aa)
Rpp30Ribonuclease P protein subunit p30. (268 aa)
Arhgap42Rho GTPase-activating protein 42. (825 aa)
Utp4Cirhin. (686 aa)
NvlNuclear valosin-containing protein-like isoform X1. (836 aa)
Gnl2Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (715 aa)
Csnk2bCasein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (215 aa)
Tmem120aTransmembrane protein 120A. (343 aa)
Nop56Nucleolar protein 56. (261 aa)
Xrn15'-3' exoribonuclease 1. (1701 aa)
LOC105985964Ribonuclease P protein subunit p40-like. (352 aa)
Dkc1H/ACA ribonucleoprotein complex subunit 4. (260 aa)
Kri1Protein KRI1 homolog. (530 aa)
LOC105994109NTF2-related export protein 2-like. (140 aa)
Brd3Bromodomain-containing protein 3. (705 aa)
Pop7Ribonuclease P protein subunit p20; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of the MRP ribonuclease complex, which cleaves pre-rRNA sequences; Belongs to the histone-like Alba family. (140 aa)
Lsg1Large subunit GTPase 1 homolog. (596 aa)
Tmem120bTransmembrane protein 120B isoform X1. (339 aa)
DxoDecapping and exoribonuclease protein isoform X1. (398 aa)
Tubgcp4Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family. (641 aa)
Rexo2Oligoribonuclease, mitochondrial. (237 aa)
Gtpbp4Nucleolar GTP-binding protein 1. (542 aa)
Nxt2NTF2-related export protein 2 isoform X1. (140 aa)
Imp4U3 small nucleolar ribonucleoprotein protein IMP4. (291 aa)
EqtnLOW QUALITY PROTEIN: equatorin. (251 aa)
Trub1Probable tRNA pseudouridine synthase 1 isoform X1. (346 aa)
Fcf1rRNA-processing protein FCF1 homolog isoform X1. (193 aa)
Emg1EMG1 N1-specific pseudouridine methyltransferase. (232 aa)
Utp14aU3 small nucleolar RNA-associated protein 14 homolog A. (773 aa)
Ophn1Oligophrenin-1. (782 aa)
Tmem203Transmembrane protein 203. (136 aa)
Mettl9Methyltransferase-like protein 9 isoform X1. (276 aa)
Pop4Ribonuclease P protein subunit p29. (172 aa)
Riok1Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (570 aa)
Vwc2Brorin. (325 aa)
Tbl3Transducin beta-like protein 3. (805 aa)
LOC106001399Guanine nucleotide-binding protein-like 1. (501 aa)
Nat10RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1027 aa)
Retreg3Protein FAM134C. (462 aa)
Nol6Nucleolar protein 6. (1144 aa)
Mphosph10U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family. (675 aa)
Gltpd2Glycolipid transfer protein domain-containing protein 2. (297 aa)
FblrRNA 2'-O-methyltransferase fibrillarin. (308 aa)
DroshaRibonuclease 3. (1311 aa)
Mdn1Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (5541 aa)
Xrn25'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (931 aa)
Heatr1HEAT repeat-containing protein 1. (1863 aa)
Utp15U3 small nucleolar RNA-associated protein 15 homolog. (518 aa)
Rbm28RNA-binding protein 28. (509 aa)
Arhgap26Rho GTPase-activating protein 26 isoform X1. (813 aa)
Nhp2Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (153 aa)
Pwp2Periodic tryptophan protein 2 homolog. (897 aa)
Bms1Ribosome biogenesis protein BMS1 homolog isoform X1. (1276 aa)
Csnk2a2Casein kinase II subunit alpha; Belongs to the protein kinase superfamily. (351 aa)
Eif6Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Behaves as a stimulatory translation initiation factor downstream insulin/growth factors. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export. Cytoplasmic release of TIF6 from 60S subunits and nuclear relocalization is promoted by a RACK1 (RACK1)- dependent protein kinase C activity. In tissues responsive to insulin, contro [...] (245 aa)
Retreg1Protein FAM134B. (471 aa)
Efl1Elongation factor Tu GTP-binding domain-containing protein 1. (1129 aa)
ENSDORP00000000639annotation not available (126 aa)
Gnl3Guanine nucleotide-binding protein-like 3. (528 aa)
Spata5Spermatogenesis-associated protein 5. (796 aa)
Nob1RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family. (408 aa)
Gar1H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (217 aa)
Ak6Adenylate kinase isoenzyme 6; Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. May have a role in nuclear energy homeostasis. Has also ATPase activity. May be involved in regulation of Cajal body (CB) formation; Belongs to the adenylate kinase family. AK6 subfamily. (172 aa)
Your Current Organism:
Dipodomys ordii
NCBI taxonomy Id: 10020
Other names: D. ordii
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