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SCO0472 SCO0472 SCO0473 SCO0473 SCO0474 SCO0474 SCO0475 SCO0475 SCO0476 SCO0476
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SCO0472SCF76.12c, possible secreted protein, len: 384 aa. Contains a possible N-terminal signal sequence. (402 aa)
SCO0473SCF76.13c, possible solute-binding lipoprotein, len: 329 aa. Similar to many e.g. Streptococcus parasanguis SW:ADHS_STRPA (EMBL; M26130) adhesin B precursor (saliva-binding protein) (309 aa), fasta scores opt: 354 z-score: 399.1 E(): 7.2e-15 23.7% identity in 317 aa overlap. Contains an appropriately positioned Prosite hit to PS00013 Prokaryotic membrane lipoprotein lipid attachment site, a Pfam match to entry PF01297 Lipoprotein_4, Adhesion lipoprotein and a possible N-terminal signal sequence. (329 aa)
SCO0474SCF76.14c, possible lipoprotein, len: 415 aa. Contains an appropriately positioned Prosite hit to PS00013 Prokaryotic membrane lipoprotein lipid attachment site and a possible N-terminal signal sequence. (415 aa)
SCO0475SCF76.15c, probable ABC transporter protein, integral membrane subunit, len: 283 aa. Similar to many e.g. Escherichia coli SW:ZNUB_ECOLI (EMBL; AE000280) high-affinity zinc uptake system membrane protein ZnuB (261 aa), fasta scores opt: 442 z-score: 483.2 E(): 1.5e-19 32.5% identity in 246 aa overlap. Contains a Pfam match to entry PF00950 ABC-3, ABC 3 transport family and multiple possible membrane spanning hydrophobic domains. (283 aa)
SCO0476SCF76.16, ABC transport protein, ATP-binding subunit, len: 252 aa. Similar to many e.g. Haemophilus influenzae SW:FECE_HAEIN (EMBL; U32720) iron(III) dicitrate transport ATP-binding protein FecE homolog (306 aa), fasta scores opt: 375 z-score: 413.4 E(): 1.2e-15 37.3% identity in 185 aa overlap. Contains a Prosite hit to PS00211 ABC transporters family signature and PS00017 ATP/GTP-binding site motif A (P-loop). (252 aa)
Your Current Organism:
Streptomyces coelicolor
NCBI taxonomy Id: 100226
Other names: S. coelicolor A3(2), Streptomyces coelicolor A3(2)
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