STRINGSTRING
SCO4524 SCO4524 SCO4525 SCO4525 SCO4526 SCO4526 SCO4527 SCO4527 SCO4528 SCO4528 SCO4529 SCO4529 SCO4530 SCO4530 SCO4531 SCO4531 SCO4532 SCO4532 SCO4533 SCO4533 SCO4535 SCO4535 SCO4536 SCO4536 SCO4537 SCO4537
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SCO4524SCD35.31, putative membrane protein, len: 239 aa. Contains possible hydrophobic membrane spanning region. (239 aa)
SCO4525Hypothetical protein SCD35.32; SCD35.32, unknown, len: 293 aa. Contains match to Prosite entry PS00038 Myc-type, 'helix-loop-helix' dimerization domain signature. (293 aa)
SCO4526SCD35.33, possible protein kinase, len: 435 aa; similar to TR:P94647 (EMBL:U77780) Chlorobium limicola secretory protein kinase Kbh, 474 aa; fasta scores: opt: 722 z-score: 805.0 E(): 0; 35.9% identity in 368 aa overlap. Contains match to Prosite entry PS00017 ATP/GTP-binding site motif A (P-loop). (435 aa)
SCO4527SCD35.34, possible integral membrane protein, len: 345 aa. Contains possible hydrophobic membrane spanning regions. (345 aa)
SCO4528SCD35.35, possible integral membrane protein, len: 302 aa. Contains possible hydrophobic membrane spanning regions. (302 aa)
SCO4529SCD35.36, possible integral membrane protein, len: 117 aa. Contains possible hydrophobic membrane spanning regions. (117 aa)
SCO45302SCD4.01, possible membrane protein (fragment), len: >147 aa. Contains possible hydrophobic membrane spanning region; SCD35.37, unknown, len: >77 aa. (186 aa)
SCO45312SCD4.02, possible septum determining protein, len: 145 aa; similar to TR:CAB92601 (EMBL:AL356813) Streptomyces coelicolor putative septum determining protein MinD3, 131 aa; fasta scores: opt: 115 z-score: 155.7 E(): 0.33; 30.7% identity in 137 aa overlap. Contains possible hydrophobic membrane spanning region. (145 aa)
SCO45322SCD4.03, possible membrane protein, len: 153 aa. Contains possible hydrophobic membrane spanning region. (153 aa)
SCO45332SCD4.04, hypothetical protein, len: 108 aa; similar to TR:CAB77307 (EMBL:AL160312) Streptomyces coelicolor hypothetical 13.8 kDa protein SCD35.23c, 119 aa; fasta scores: opt: 290 z-score: 364.1 E(): 8.2e-13; 47.6% identity in 105 aa overlap. (108 aa)
SCO45352SCD4.06, possible integral membrane protein, len: 442 aa. Contains possible hydrophobic membrane spanning regions. (442 aa)
SCO45362SCD4.07, hypothetical protein, len: 214 aa; similar to TR:CAB77303 (EMBL:AL160312) Streptomyces coelicolor hypothetical 21.2 kDa protein SCD35.19c, 193 aa; fasta scores: opt: 228 z-score: 264.4 E(): 2.9e-07; 31.1% identity in 212 aa overlap. (214 aa)
SCO4537Hypothetical protein 2SCD4.08; 2SCD4.08, unknown, len: 201 aa. (201 aa)
Your Current Organism:
Streptomyces coelicolor
NCBI taxonomy Id: 100226
Other names: S. coelicolor A3(2), Streptomyces coelicolor A3(2)
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