STRINGSTRING
SCO5975 SCO5975 SCO0613 SCO0613
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SCO5975SCBAC16H6.10, arcA2, arginine deiminase, len: 418 aa: similar to many e.g. SW:Q9RJN1 (ARCA_STRCO) arginine deaminase ArcA SCF55.37 from Streptomyces coelicolor (420 aa) fasta scores; opt: 1124, Z-score: 1310.8, 43.350% identity (43.781% ungapped) in 406 aa overlap and SW:O31017 (ARCA_RHIET) arginine deaminase from Rhizobium etli (409 aa) fasta scores; opt: 1153, Z-score: 1344.7, 45.854% identity (47.000% ungapped) in 410 aa overlap. Contains Pfam match to entry PF02726 Arg_deiminase, Arginine deiminase. (418 aa)
SCO0613SCF55.37, arcA, arginine deiminase, len: 420 aa; similar to SW:ARCA_PSEAE (EMBL:X14694) Pseudomonas aeruginosa arginine deiminase (EC 3.5.3.6) ArcA, 417 aa; fasta scores: opt: 1807 z-score: 2137.4 E(): 0; 61.7% identity in 412 aa overlap. (420 aa)
Your Current Organism:
Streptomyces coelicolor
NCBI taxonomy Id: 100226
Other names: S. coelicolor A3(2), Streptomyces coelicolor A3(2)
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