Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SCO0755 | SCO0756 | gene:17758338 | gene:17758339 | SCF81.14, possible ABC transporter, len: 740 aa; similar to SW: COMA_STRPN (EMBL:M36180) Streptococcus pneumoniae transport ATP-binding protein ComA, 717 aa; fasta scores: opt: 1035 z-score: 1141.5 E(): 0; 29.1% identity in 721 aa overlap. Contains two matches to Pfam entries PF00664 ABC_membrane, ABC transporter transmembrane region and PF00005 ABC_tran, ABC transporter and two to Prosite entries PS00017 ATP/GTP-binding site motif A (P-loop) and PS00211 ABC transporters family signature. | SCF81.15, possible ABC transporter, len: 940 aa; similar to TR:P74829 (EMBL:U51197) Sphingomonas sp. S88 hypothetical 79.4 KD protein AtrB, 728 aa; fasta scores: opt: 803 z-score: 870.4 E(): 0; 32.7% identity in 562 aa overlap and to SW:CYAB_BORPE (EMBL:X14199) Bordetella pertussis cyclolysin secretion ATP-binding protein CyaB, 712 aa; fasta scores: opt: 785 z-score: 851.0 E(): 0; 32.2% identity in 631 aa overlap. Contains two matches to Pfam entries PF00664 ABC_membrane, ABC transporter transmembrane region and PF00005 ABC_tran, ABC transporter and two to Prosite entries PS00017 ATP/G [...] | 0.910 |
| SCO0756 | SCO0755 | gene:17758339 | gene:17758338 | SCF81.15, possible ABC transporter, len: 940 aa; similar to TR:P74829 (EMBL:U51197) Sphingomonas sp. S88 hypothetical 79.4 KD protein AtrB, 728 aa; fasta scores: opt: 803 z-score: 870.4 E(): 0; 32.7% identity in 562 aa overlap and to SW:CYAB_BORPE (EMBL:X14199) Bordetella pertussis cyclolysin secretion ATP-binding protein CyaB, 712 aa; fasta scores: opt: 785 z-score: 851.0 E(): 0; 32.2% identity in 631 aa overlap. Contains two matches to Pfam entries PF00664 ABC_membrane, ABC transporter transmembrane region and PF00005 ABC_tran, ABC transporter and two to Prosite entries PS00017 ATP/G [...] | SCF81.14, possible ABC transporter, len: 740 aa; similar to SW: COMA_STRPN (EMBL:M36180) Streptococcus pneumoniae transport ATP-binding protein ComA, 717 aa; fasta scores: opt: 1035 z-score: 1141.5 E(): 0; 29.1% identity in 721 aa overlap. Contains two matches to Pfam entries PF00664 ABC_membrane, ABC transporter transmembrane region and PF00005 ABC_tran, ABC transporter and two to Prosite entries PS00017 ATP/GTP-binding site motif A (P-loop) and PS00211 ABC transporters family signature. | 0.910 |
| SCO5222 | SCO6073 | gene:17762873 | gene:17763732 | Putative lyase; Catalyzes the cyclization of farnesyl diphosphate (FPP) to the sesquiterpene epi-isozizaene. | Putative cyclase; Tow-domain protein where the N-terminal domain catalyzes the cyclization of farnesyl diphosphate (FPP) to a 85:15 mixture of the sesquiterpene alcohol germacradienol and the sesquiterpene hydrocarbon germacrene D. The C-terminal domain partially converts the germacradienol formed into geosmin, the characteristic odoriferous ('earthy aroma') constituent of Streptomyces species. | 0.945 |
| SCO5222 | SCO7700 | gene:17762873 | gene:17765360 | Putative lyase; Catalyzes the cyclization of farnesyl diphosphate (FPP) to the sesquiterpene epi-isozizaene. | Putative cyclase; Catalyzes the cyclization of 2-methylgeranyl diphosphate (2- MeGPP) to 2-methylisoborneol (2-MIB), which likely involves the intermediacy of 2-methyllinalyl diphosphate. Is also able to catalyze the cyclization of geranyl diphosphate (GPP), albeit with much lower efficiency, leading to the formation of a complex mixture of cyclic monoterpenes, consisting of alpha-pinene (6%), beta-pinene (23%), limonene (32%), gamma-terpinene (29%), and delta-terpinene (10%). Belongs to the terpene synthase family. 2-methylisoborneol synthase subfamily. | 0.695 |
| SCO6073 | SCO5222 | gene:17763732 | gene:17762873 | Putative cyclase; Tow-domain protein where the N-terminal domain catalyzes the cyclization of farnesyl diphosphate (FPP) to a 85:15 mixture of the sesquiterpene alcohol germacradienol and the sesquiterpene hydrocarbon germacrene D. The C-terminal domain partially converts the germacradienol formed into geosmin, the characteristic odoriferous ('earthy aroma') constituent of Streptomyces species. | Putative lyase; Catalyzes the cyclization of farnesyl diphosphate (FPP) to the sesquiterpene epi-isozizaene. | 0.945 |
| SCO6073 | SCO7700 | gene:17763732 | gene:17765360 | Putative cyclase; Tow-domain protein where the N-terminal domain catalyzes the cyclization of farnesyl diphosphate (FPP) to a 85:15 mixture of the sesquiterpene alcohol germacradienol and the sesquiterpene hydrocarbon germacrene D. The C-terminal domain partially converts the germacradienol formed into geosmin, the characteristic odoriferous ('earthy aroma') constituent of Streptomyces species. | Putative cyclase; Catalyzes the cyclization of 2-methylgeranyl diphosphate (2- MeGPP) to 2-methylisoborneol (2-MIB), which likely involves the intermediacy of 2-methyllinalyl diphosphate. Is also able to catalyze the cyclization of geranyl diphosphate (GPP), albeit with much lower efficiency, leading to the formation of a complex mixture of cyclic monoterpenes, consisting of alpha-pinene (6%), beta-pinene (23%), limonene (32%), gamma-terpinene (29%), and delta-terpinene (10%). Belongs to the terpene synthase family. 2-methylisoborneol synthase subfamily. | 0.888 |
| SCO7700 | SCO5222 | gene:17765360 | gene:17762873 | Putative cyclase; Catalyzes the cyclization of 2-methylgeranyl diphosphate (2- MeGPP) to 2-methylisoborneol (2-MIB), which likely involves the intermediacy of 2-methyllinalyl diphosphate. Is also able to catalyze the cyclization of geranyl diphosphate (GPP), albeit with much lower efficiency, leading to the formation of a complex mixture of cyclic monoterpenes, consisting of alpha-pinene (6%), beta-pinene (23%), limonene (32%), gamma-terpinene (29%), and delta-terpinene (10%). Belongs to the terpene synthase family. 2-methylisoborneol synthase subfamily. | Putative lyase; Catalyzes the cyclization of farnesyl diphosphate (FPP) to the sesquiterpene epi-isozizaene. | 0.695 |
| SCO7700 | SCO6073 | gene:17765360 | gene:17763732 | Putative cyclase; Catalyzes the cyclization of 2-methylgeranyl diphosphate (2- MeGPP) to 2-methylisoborneol (2-MIB), which likely involves the intermediacy of 2-methyllinalyl diphosphate. Is also able to catalyze the cyclization of geranyl diphosphate (GPP), albeit with much lower efficiency, leading to the formation of a complex mixture of cyclic monoterpenes, consisting of alpha-pinene (6%), beta-pinene (23%), limonene (32%), gamma-terpinene (29%), and delta-terpinene (10%). Belongs to the terpene synthase family. 2-methylisoborneol synthase subfamily. | Putative cyclase; Tow-domain protein where the N-terminal domain catalyzes the cyclization of farnesyl diphosphate (FPP) to a 85:15 mixture of the sesquiterpene alcohol germacradienol and the sesquiterpene hydrocarbon germacrene D. The C-terminal domain partially converts the germacradienol formed into geosmin, the characteristic odoriferous ('earthy aroma') constituent of Streptomyces species. | 0.888 |