STRINGSTRING
SCO2898 SCO2898 SCO5210 SCO5210 SCO1918 SCO1918
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SCO2898SCE6.35c, sugE, molecular chaperone, len: 106 aa. Highly similar to several proposed molecular chaperones e.g. Escherichia coli SW:SUGE_ECOLI(EMBL:X69949) SugE (105 aa), fasta scores opt: 394 z-score: 454.4 E(): 7e-18 51.0% identity in 104 aa overlap. Contains a Pfam match to entry PF00893 DUF7, Integral membrane protein and multiple possible membrane spanning hydrophobic domains. (106 aa)
SCO5210SC7E4.07c, possible molecular chaperone, len: 107 aa; similar to SW:SUGE_ECOLI (EMBL:X69949) Escherichia coli SugE protein, 105 aa; fasta scores: opt: 341 z-score: 449.1 E(): 1.5e-17; 44.7% identity in 103 aa overlap and to TR:CAB88839 (EMBL:AL353832) Streptomyces coelicolor sugE, SCE6.35c, 106 aa; fasta scores: opt: 323 z-score: 386.5 E(): 6e-16; 43.0% identity in 107 aa overlap. Contains Pfam match to entry PF00893 DUF7, Integral membrane protein and possible hydrophobic membrane spanning regions. (107 aa)
SCO1918SCI7.36c, possible integral membrane protein, len: 106aa; similar to many proposed to be involved in resistance mechanisms eg. SW:EMRE_ECOLI viologen resistance protein from Escherichia coli (110 aa) fasta scores; opt: 313, z-score: 392.7, E(): 1.5e-14, (51.0% identity in 100 aa overlap). Contains Pfam match to entry PF00893 DUF7, Integral membrane protein. (106 aa)
Your Current Organism:
Streptomyces coelicolor
NCBI taxonomy Id: 100226
Other names: S. coelicolor A3(2), Streptomyces coelicolor A3(2)
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