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SCO0324 SCO0324 SCO2302 SCO2302 SCO0472 SCO0472 SCO0474 SCO0474 SCO3011 SCO3011
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SCO0324SCF12.03c, possible secreted protein, len: 799 aa; similar to TR:CAC45838 (EMBL:AL591786) Rhizobium meliloti (Sinorhizobium meliloti) hypothetical transmembrane protein (fragment) SMC01907, 729 aa; fasta scores: opt: 492 Z-score: 517.1 E(): 3.6e-21; 42.318% identity in 742 aa overlap. Contains possible cleavable N-terminal signal sequence. (792 aa)
SCO2302Hypothetical protein SCC30.10; SCC30.10, unknown, len: 422 aa. High content in glycine, alanine and proline amino acid residues. (422 aa)
SCO0472SCF76.12c, possible secreted protein, len: 384 aa. Contains a possible N-terminal signal sequence. (402 aa)
SCO0474SCF76.14c, possible lipoprotein, len: 415 aa. Contains an appropriately positioned Prosite hit to PS00013 Prokaryotic membrane lipoprotein lipid attachment site and a possible N-terminal signal sequence. (415 aa)
SCO3011SCE33.13c, possible lipoprotein, len: 615 aa; similar to TR:O05889 (EMBL:Z95121) Mycobacterium tuberculosis hypothetical 61.2 kD protein MTCY20B11.19c, 583 aa; fasta scores: opt: 228 z-score: 243.7 E(): 4.1e-06; 25.5% identity in 624 aa overlap. Contains properly located match to Prosite entry PS00013 Prokaryotic membrane lipoprotein lipid attachment site and possible N-terminal region signal peptide sequence. (615 aa)
Your Current Organism:
Streptomyces coelicolor
NCBI taxonomy Id: 100226
Other names: S. coelicolor A3(2), Streptomyces coelicolor A3(2)
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