STRINGSTRING
SCO1059 SCO1059 SCO2531 SCO2531 SCO2798 SCO2798 SCO6604 SCO6604 SCO7558 SCO7558
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SCO1059SCG22.05, probable beta-glucosidase, len: 459 aa; similar to TR:Q59976 (EMBL:Z29625) Streptomyces sp. beta-glucosidase (EC 3.2.1.21) Bgl3, 479 aa; fasta scores: opt: 1627 z-score: 1895.8 E(): 0; 57.6% identity in 458 aa overlap. Contains Pfam match to entry PF00232 Glyco_hydro_1, Glycosyl hydrolase family 1 and match to Prosite entry PS00653 Glycosyl hydrolases family 1 N-terminal signature. (459 aa)
SCO2531Putative beta-glucosidase; SCC117.04, possible beta-glucosidase, len: 448 aa. Highly similar to many including: Microbispora bispora SW:BGLB_MICBI(EMBL:M97265) thermostable beta-glucosidase B (EC 3.2.1.21) (473 aa), fasta scores opt: 1059 z-score: 1221.1 E(): 0 48.7% identity in 454 aa overlap and Paenibacillus polymyxa (Bacillus polymyxa) SW:BGLA_PAEPO(EMBL:M60210) beta-glucosidase A (EC 3.2.1.21) (448 aa), fasta scores opt: 1014 z-score: 1169.7 E():0 40.4% identity in 455 aa overlap. Contains a Prosite hit to PS00653 Glycosyl hydrolases family 1 N-terminal signature and a Pfam match [...] (448 aa)
SCO27982SCC13.06, probable cellobiose hydrolase, len: 479 aa; highly similar to TR:Q59976 (EMBL:Z29625) Streptomyces sp. beta-glucosidase (EC 3.2.1.21) (cellobiose) Bgl3, 479 aa; fasta scores: opt: 2214 z-score: 2511.6 E(): 0; 65.5% identity in 472 aa overlap. Contains Pfam match to entry PF00232 Glyco_hydro_1, Glycosyl hydrolase family 1 and matches to Prosite entries PS00653 Glycosyl hydrolases family 1 N-terminal signature and PS00572 Glycosyl hydrolases family 1 active site. (479 aa)
SCO6604SC1F2.01, probable beta-glucosidase, partial CDS, len >311 aa; similar to mnay e.g. BGLS_AGRSP beta-glucosidase (EC 3.2.1.21) (459 aa), fasta scores; opt: 784 z-score: 986.7 E(): 0, 42.5% identity in 315 aa overlap. Overlaps and extends SC8A6.25. Contains Pfam match to entry PF00232 glycosyl_hydro1, Glycosyl hydrolases family 1, score 350.20, E-value 2.2e-101; SC8A6.25, probable beta-glucosidase, partial CDS, le n >190 aa; highly similar to many e.g. BGLA_BACCI beta-glucosidase (EC 3.2.1.21) (449 aa), fasta scores; opt: 752 z-sc ore: 1084.7 E(): 0, 59.9% identity in 167 aa overlap. Con [...] (468 aa)
SCO7558SC5F1.12, probable beta-glucosidase, len: 479 aa; similar to TR:Q59976 (EMBL:Z29625) Streptomyces sp. beta-glucosidase (EC 3.2.1.21) Bgl3, 479 aa; fasta scores: opt: 2961 z-score: 3301.3 E(): 0; 88.9% identity in 479 aa overlap and to TR:CAC10107 (EMBL:AL442165) Streptomyces coelicolor putative cellobiose hydrolase 2SCC13.06, 479 aa; fasta scores: opt: 2255 z-score: 2227.1 E(): 0; 67.4% identity in 470 aa overlap. Contains Pfam match to entry PF00232 Glyco_hydro_1, Glycosyl hydrolase family 1 and match to Prosite entry PS00653 Glycosyl hydrolases family 1 N-terminal signature and PS005 [...] (479 aa)
Your Current Organism:
Streptomyces coelicolor
NCBI taxonomy Id: 100226
Other names: S. coelicolor A3(2), Streptomyces coelicolor A3(2)
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