(2 nodes) L-rhamnose mutarotase network (Streptomyces coelicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SCO0355	Conserved hypothetical protein SCF41.14; SCF41.14, unknown, len: 113 aa. Shares a low level of similarity with Bacillus subtilis TR:O05263 (EMBL; Z93938) hypothetical 12.6 KD protein (104 aa), fasta scores opt: 129 z-score: 179.4 E(): 0.012 31.3% identity in 96 aa overlap. (113 aa)
	SCO0807	Conserved hypothetical protein SCF43.18c; SCF43.18c, unknown, len: 107 aa. Highly similar to several proteins of unknown function e.g. Escherichia coli SW:YIIL_ECOLI(EMBL:L19201) hypothetical 12.3 KD protein YiiL (104 aa), fasta scores opt: 174 z-score: 248.9 E(): 1.8e-06 31.1% identity in 106 aa overlap and Bacillus subtilis TR:O05263(EMBL:Z93938) hypothetical 12.6 KD protein YulD (104 aa), fasta scores opt: 254 z-score: 355.8 E(): 1.9e-12 43.4% identity in 106 aa overlap. (106 aa)

Your Current Organism:

Streptomyces coelicolor

NCBI taxonomy Id: 100226
Other names: S. coelicolor A3(2), Streptomyces coelicolor A3(2)