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SCO0291 SCO0291 SCO0290 SCO0290 SCO0292 SCO0292 SCO0322 SCO0322 SCO0354 SCO0354 SCO0449 SCO0449 SCO0531 SCO0531 SCO0532 SCO0532 SCO0533 SCO0533 SCO0707 SCO0707 SCO0708 SCO0708 SCO0709 SCO0709 SCO0710 SCO0710 SCO0808 SCO0808 SCO0809 SCO0809 SCO0810 SCO0810 SCO0811 SCO0811 SCO0914 SCO0914 SCO1065 SCO1065 SCO1465 SCO1465 SCO1557 SCO1557 SCO1558 SCO1558 SCO1559 SCO1559 SCO1620 SCO1620 SCO1621 SCO1621 SCO1707 SCO1707 SCO1898 SCO1898 SCO1899 SCO1899 SCO1900 SCO1900 SCO2008 SCO2008 SCO2009 SCO2009 SCO2010 SCO2010 SCO2011 SCO2011 SCO2012 SCO2012 SCO2229 SCO2229 SCO2230 SCO2230 SCO2231 SCO2231 SCO2257 SCO2257 SCO2258 SCO2258 SCO2323 SCO2323 SCO2404 SCO2404 SCO2405 SCO2405 SCO2406 SCO2406 SCO2414 SCO2414 SCO2415 SCO2415 SCO2416 SCO2416 SCO2417 SCO2417 SCO2418 SCO2418 SCO2419 SCO2419 SCO2420 SCO2420 SCO2421 SCO2421 SCO2422 SCO2422 SCO2505 SCO2505 SCO2506 SCO2506 SCO2507 SCO2507 SCO2630 SCO2630 SCO2746 SCO2746 SCO2747 SCO2747 SCO2749 SCO2749 SCO2795 SCO2795 SCO2796 SCO2796 SCO2797 SCO2797 SCO2930 SCO2930 SCO2931 SCO2931 SCO2932 SCO2932 SCO2933 SCO2933 SCO2944 SCO2944 SCO2945 SCO2945 SCO2946 SCO2946 SCO2968 SCO2968 SCO2969 SCO2969 SCO2978 SCO2978 SCO2979 SCO2979 SCO2980 SCO2980 SCO2995 SCO2995 SCO2996 SCO2996 SCO3159 SCO3159 SCO3160 SCO3160 SCO3161 SCO3161 SCO3667 SCO3667 SCO3704 SCO3704 SCO3705 SCO3705 SCO3706 SCO3706 SCO3947 SCO3947 SCO4139 SCO4139 SCO4140 SCO4140 SCO4141 SCO4141 SCO4142 SCO4142 SCO4240 SCO4240 SCO4830 SCO4830 SCO4831 SCO4831 SCO4832 SCO4832 SCO4884 SCO4884 SCO4885 SCO4885 SCO4886 SCO4886 SCO4887 SCO4887 SCO4888 SCO4888 SCO5117 SCO5117 SCO5118 SCO5118 SCO5119 SCO5119 SCO5120 SCO5120 SCO5121 SCO5121 SCO5232 SCO5232 SCO5233 SCO5233 SCO5234 SCO5234 SCO5646 SCO5646 SCO5647 SCO5647 SCO5648 SCO5648 SCO5658 SCO5658 SCO5667 SCO5667 SCO5668 SCO5668 SCO5669 SCO5669 SCO5670 SCO5670 SCO5686 SCO5686 SCO5687 SCO5687 SCO5688 SCO5688 SCO5774 SCO5774 SCO5775 SCO5775 SCO5776 SCO5776 SCO5777 SCO5777 SCO5923 SCO5923 SCO5924 SCO5924 SCO5958 SCO5958 SCO5959 SCO5959 SCO5960 SCO5960 SCO5961 SCO5961 SCO6005 SCO6005 SCO6006 SCO6006 SCO6007 SCO6007 SCO6009 SCO6009 SCO6010 SCO6010 SCO6011 SCO6011 SCO6062 SCO6062 SCO6063 SCO6063 SCO6064 SCO6064 SCO6065 SCO6065 SCO6567 SCO6567 SCO6568 SCO6568 SCO6569 SCO6569 SCO6757 SCO6757 SCO6758 SCO6758 SCO6814 SCO6814 SCO6815 SCO6815 SCO6816 SCO6816 SCO7028 SCO7028 SCO7029 SCO7029 SCO7030 SCO7030 SCO7165 SCO7165 SCO7166 SCO7166 SCO7181 SCO7181 SCO7182 SCO7182 SCO7183 SCO7183 SCO7184 SCO7184 SCO7185 SCO7185 SCO7398 SCO7398 SCO7399 SCO7399 SCO7400 SCO7400 SCO7555 SCO7555 SCO7556 SCO7556 SCO7557 SCO7557
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
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experimentally determined
Predicted Interactions
gene neighborhood
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SCO0291SCF85.19, possible binding protein dependent transport protein, len: 300 aa. Similar to many including: Streptomyces lividans TR:Q9ZI17 (EMBL; AF043654) BxlF (317 aa), fasta scores opt: 873 z-score: 1049.2 E(): 0 44.0% identity in 298 aa overlap and Streptomyces coelicolor TR:CAB41203 (EMBL; AL049661)putative binding protein dependent transport protein SCE134.05C (327 aa), fasta scores opt: 551 z-score: 664.3 E(): 1.2e-29 32.7% identity in 294 aa overlap. Contains a Pfam match to entry PF00528 BPD_transp, Binding-protein-dependent transport systems inner membrane component and a PS0040 [...] (300 aa)
SCO0290SCF85.18, probable solute-binding protein, len: 436 aa. Similar to many including: Streptomyces lividans TR:Q9Z492 (EMBL; AF043654) BxlE precursor (434 aa), fasta scores opt: 946 z-score: 1058.6 E(): 0 33.7% identity in 427 aa overlap and Streptococcus mutans SW:MSME_STRMU (EMBL; M77351) multiple sugar-binding protein precursor MsmE (420 aa), fasta scores opt: 258 z-score: 291.6 E(): 6.9e-09 24.2% identity in 351 aa overlap. Contains a Pfam match to entry PF01547 SBP_bacterial_1, PS00013 Prokaryotic membrane lipoprotein lipid attachment site and a PS00017 ATP/GTP-binding site motif A ( [...] (436 aa)
SCO0292SC5G9.01, probable sugar ABC-transporter integral membrane protein, partial CDS, len: >148 aa; similar to e.g. TR:O51925 (EMBL:AF012836), malG, Thermococcus litoralis inner membrane protein from trehalose/maltose ABC-transporter system (278 aa), fasta scores; opt: 296 z-score: 384.7 E(): 4.6e-14, 32.2% identity in 146 aa overlap. Also similar to many putative ABC-transporter components e.g. SW:YOR2_CALSR (EMBL:L18965) Caldicellulosiruptor sp. (strain Rt8B.4) putative membrane bound sugar transport protein ORF2 (275 aa) (43.0% identity in 142 aa overlap). Contains hydrophobic, possible [...] (298 aa)
SCO0322SCF12.01c, possible ABC transport ATP-binding subunit, len: >230aa; similar to many eg. SW:TLRC_STRFR tylosin resistance ATP-binding protein from Streptomyces fradiae (548 aa) fasta scores; opt: 1017, z-score: 1131.8, E(): 0, (69.0% identity in 232 aa overlap). Contains Prosite match to PS00211 ABC transporters family signature and Prosite match to PS00017 ATP/GTP-binding site motif A (P-loop); SC5G9.31c, probable ABC-transporter ATP-binding protein, partial CDS, len: >371 aa; similar ATP-binding components from antibiotic resistance export systems e.g. SW:TLRC_STRFR (EMBL:M57437), tlr [...] (564 aa)
SCO0354SCF41.13, possible binding-protein-dependent transport protein, len: 280 aa, Similar to many e.g. Streptomyces coelicolor TR:O50501 (EMBL; AL009199) probable transmembrane transport protein SC7b7.04 (302 aa), fasta scores opt: 584 z-score: 670.3 E(): 5.5e-30 36.1% identity in 274 aa overlap. Contains multiple membrane spanning hydrophobic domains, a PS00402 Binding-protein-dependent transport systems inner membrane comp sign and a Pfam match to entry PF00528 BPD_transp, Binding-protein-dependent transport systems inner membrane component. (280 aa)
SCO0449SCF51A.27, possible secreted solute-binding lipoprotein, len: 359 aa. Weakly similar to many solute-binding proteins e.g. Streptomyces coelicolor TR:O69944 (EMBL; AL023862) putative secreted solute binding protein SC3F9.04 (348 aa), fasta scores opt: 231 z-score: 259.4 E(): 4.3e-07 23.2% identity in 366 aa overlap. Contains a possible N-terminal signal sequence and an appropriately positioned Prosite hit to, PS00013, a prokaryotic membrane lipoprotein lipid attachment site. (359 aa)
SCO0531SCF11.11, probable sugar transporter sugar binding protein, len: 422 aa; similar to TR:P72397 (EMBL:Y07706) Streptomyces coelicolor MalE, putative maltose-binding protein, 423 aa; fasta scores: opt: 367 z-score: 390.0 E(): 2.4e-14; 27.2% identity in 419 aa overlap. Contains Pfam match to entry PF01547 SBP_bacterial_1, bacterial extracellular solute-binding protein and a prosite match correctly situated to entry PS00013 prokaryotic membrane lipoprotein lipid attachment site. Contains probable N-terminal signal sequence. (422 aa)
SCO0532SCF11.12, probable sugar transporter membrane protein, len: 302 aa; similar to TR:CAB55533 (EMBL:Y07706) Streptomyces coelicolor inner membrane protein MalF, 300 aa; fasta scores: opt: 493 z-score: 600.8 E(): 4.3e-26; 32.6% identity in 291 aa overlap. Contains a Pfam match to entry PF00528 BPD_transp, binding-protein-dependent transport systems inner membrane component and a prosite match to entry PS00402 binding-protein-dependent transport systems inner membrane component signature. (302 aa)
SCO0533SCF11.13, possible sugar transporter membrane protein, len: 285 aa; similar to TR:CAB46387 (EMBL:AL096743) Streptomyces coelicolor putative integral membrane transport protein MalG, 296 aa; fasta scores: opt: 538 z-score: 675.0 E(): 3.2e-30; 33.7% identity in 279 aa overlap. Contains Pfam match to entry PF00528 BPD_transp, binding-protein-dependent transport systems inner membrane component and prosite match to entry PS00402 binding-protein-dependent transport systems inner membrane component signature. (285 aa)
SCO0707SCF42.17c, possible branched-chain amino acid ABC transport permease, len: 398 aa. Similar to many amino acid transporters including: Pseudomonas aeruginosa SW:BRAE_PSEAE (EMBL:D90223) high-affinity branched-chain amino acid transport protein BraE (417 aa), fasta scores opt: 327 z-score: 334.2 E(): 3.2e-11 28.3% identity in 336 aa overlap and Streptomyces coelicolor TR:CAB52066 (EMBL:AL109732) putative branched chain amino acid transport permease SC7H2.24 (608 aa), fasta scores opt: 403 z-score: 407.6 E(): 2.6e-15 31.0% identity in 342 aa overlap. Contains a possible N-terminal signal [...] (398 aa)
SCO0708SCF42.18c, possible branched-chain amino acid ABC transport protein, len: 299 aa. Similar to many other transport proteins including: Pseudomonas aeruginosa SW:BRAD_PSEAE(EMBL:D90223) high-affinity branched-chain amino acid transport protein, BraD (307 aa), fasta scores opt: 318 z-score: 364.2 E(): 6.8e-13 28.5% identity in 312 aa overlap and Deinococcus radiodurans TR:AAF09863(EMBL:AE001889) branched-chain amino acid ABC transporter, permease protein (285 aa), fasta scores opt: 432 z-score: 492.1 E(): 5.1e-20 34.6% identity in 295 aa overlap. Contains multiple possible membrane spanni [...] (299 aa)
SCO0709SCF42.19c, possible branched-chain amino acid transport ATP-binding protein, len: 266 aa. Similar to many including: Pseudomonas aeruginosa SW:BRAF_PSEAE(EMBL:D90223) high-affinity branched-chain amino acid transport ATP-binding protein, BraF (255 aa), fasta scores opt: 689 z-score: 786.7 E():0 41.3% identity in 252 aa overlap and Deinococcus radiodurans TR:AAF11669(EMBL:AE002047) branched-chain amino acid ABC transporter, ATP-binding protein (259 aa), fasta scores opt: 749 z-score: 854.2 E():0 46.9% identity in 256 aa overlap. Also similar to Streptomyces coelicolor TR:CAB52067(EMBL:A [...] (266 aa)
SCO0710SCF42.20c, possible branched-chain amino acid transport ATP-binding protein, len: 263 aa. Similar to many including: Pseudomonas aeruginosa SW:BRAG_PSEAE(EMBL:D90223) high-affinity branched-chain amino acid transport ATP-binding protein, BraG (233 aa), fasta scores opt: 642 z-score: 685.0 E(): 9.1e-31 46.7% identity in 240 aa overlap and Streptomyces coelicolor TR:CAB52068(EMBL:AL109732) putative branched chain amino acid transport ATP-binding protein, SC7H2.26 (238 aa), fasta scores opt: 724 z-score: 770.7 E():0 48.5% identity in 241 aa overlap. Also similar to the adjoining CDS on th [...] (263 aa)
SCO0808SCF43.19c, possible secreted solute-binding lipoprotein, len: 360 aa. Similar to many bacterial extracellular solute-binding proteins including: Bacillus subtilis SW:RBSB_BACSU(EMBL:Z92953) D-ribose-binding protein precursor, RbsB (305 aa), fasta scores opt: 234 z-score: 252.1 E(): 1.2e-06 24.9% identity in 277 aa overlap and Streptomyces coelicolor TR:CAB56679(EMBL:AL121596) possible secreted solute-binding lipoprotein SCF51A.27 (359 aa), fasta scores opt: 1487 z-score: 1547.8 E(): 0 63.1% identity in 360 aa overlap. Contains an appropriately positioned Prosite hit to PS00013 Prokaryo [...] (360 aa)
SCO0809SCF43.20c. possible ABC transporter permease, len: 337 aa. Similar to many permeases e.g. Bacillus subtilis SW:RBSC_BACSU(EMBL:Z25798) ribose transport system permease protein RbsC (323 aa), fasta scores opt: 561 z-score: 603.2 E(): 3.3e-26 33.9% identity in 295 aa overlap. Also similar to the adjoining CDS, SCF43.21c, possible ABC transporter permease (346 aa), fasta scores opt: 545 z-score: 528.3 E(): 5e-24 33.4% identity in 335 aa overlap. Contains multiple possible membrane spanning hydrophobic domains. (337 aa)
SCO0810SCF43.21c. possible ABC transporter permease, len: 346 aa. Similar to many permeases e.g. Bacillus subtilis SW:RBSC_BACSU(EMBL:Z25798) ribose transport system permease protein RbsC (323 aa), fasta scores opt: 591 z-score: 644.0 E(): 1.7e-28 33.4% identity in 302 aa overlap and Escherichia coli SW:RBSC_ECOLI(EMBL:L10328) ribose transport system permease protein RbsC (321 aa), fasta scores opt: 596 z-score: 649.4 E(): 8.6e-29 34.5% identity in 304 aa overlap. Also similar to the adjoining CDS, SCF43.20c, possible ABC transporter permease (346 aa), fasta scores opt: 545 z-score: 528.3 E() [...] (346 aa)
SCO0811Putative ABC transporter ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family. (505 aa)
SCO0914SCM10.02c, possible lipoprotein, len: 422 aa; similar to TR:CAB59588 (EMBL:AL132662) Streptomyces coelicolor putative sugar transporter sugar binding protein SCF11.11, 422 aa; fasta scores: opt: 1543 z-score: 1682.7 E(): 0; 57.6% identity in 427 aa overlap and to SW: MALE_ENTAE Enterobacter aerogenes maltose-binding periplasmic protein precursor MalE, 396 aa; fasta scores: opt: 224 z-score: 248.5 E(): 1.9e-06; 23.9% identity in 427 aa overlap. Contains Pfam match to entry PF01547 SBP_bacterial_1, Bacterial extracellular solute-binding protein and match correctly situated to Prosite ent [...] (422 aa)
SCO1065SCG22.11c, possible sugar transport sugar binding protein, len: 453 aa; similar to SW:LACE_AGRRD (EMBL:X66596) Agrobacterium radiobacter lactose-binding protein precursor LacE, 422 aa; fasta scores: opt: 273 z-score: 296.9 E(): 4.6e-09; 23.8% identity in 420 aa overlap. Contains Pfam match to entry PF01547 SBP_bacterial_1, Bacterial extracellular solute-binding protein and possible N-terminal region signal peptide sequence. (453 aa)
SCO1465SCL6.22c, possible secreted protein, len: 401 aa; similar to TR:Q55471 (EMBL:D64006) Synechocystis sp. hypothetical 46.5 kD protein, 421 aa; fasta scores: opt: 240 z-score: 260.1 E(): 4.6e-07; 28.8% identity in 385 aa overlap. Contains possible N-terminal region signal peptide sequence. (401 aa)
SCO1557SCL11.13c, possible lipoprotein, len: 275 aa; similar to TR:AAD51879 (EMBL:AF102556) Salmonella enteritidis liporpotein SfbA, 276 aa; fasta scores: opt: 519 z-score: 578.9 E(): 8e-25; 38.0% identity in 258 aa overlap. Contains correctly situated match to Prosite entry PS00013 Prokaryotic membrane lipoprotein lipid attachment site and possible N-terminal region signal peptide sequence; Belongs to the nlpA lipoprotein family. (275 aa)
SCO1558SCL11.14c, probable ABC transporter permease protein, len: 240 aa; similar to TR:AAF10929 (EMBL:AE001982) Deinococcus radiodurans ABC transporter, permease protein DR1357, 218 aa; fasta scores: opt: 721 z-score: 842.8 E(): 0; 57.7% identity in 213 aa overlap and to SW:PROW_BACSU (EMBL:U38418) Bacillus subtilis glycine betaine/L-proline transport system permease protein ProW, 217 aa; fasta scores: opt: 212 z-score: 255.8 E(): 7.9e-07; 28.4% identity in 194 aa overlap. Contains Pfam match to entry PF00528 BPD_transp, Binding-protein-dependent transport systems inner membrane component. (240 aa)
SCO1559Putative ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. (368 aa)
SCO1620SCI41.03c, opuABC glycine betaine transport system permease protein, len: 871 aa. N-terminal region highly similar to SW:OPUB_BACSU (P46921) Bacillus subtilis glycine betaine transport system permease protein; fasta scores: opt: 847 z-score: 884.1 E(): 0; 47.2% identity in 269 aa overlap, and C-terminal region similar to SW:OPUC_BACSU glyine betaine-binding protein precusor; fasta scores; opt: 322 z-score: 339.7 E(): 1.5e-11; 32.8% identity in 271 aa overlap. Contains Pfam match to entry PF00528 BPD_transp, binding-protein-dependent transport systems inner membrane component and prosit [...] (871 aa)
SCO1621SCI41.04c, opuAA glycine betaine transport ATP-binding protein, len: 364 aa. Highly similar to SW:OPUA_BACSU (P46920) Bacillus subtilis glycine betaine transport ATP-binding protein; fasta scores: opt: 1093 z-score: 1200.6 E():0; 52.4% identity in 328 aa overlap. Contains Pfam match to PF00005 ABC_tran, ABC transporter and PS00211 ABC transporters family signature. (364 aa)
SCO1707SCI30A.28c, probable ABC sugar transporter, ATP-binding subunit, len: 445aa; similar to many eg. TR:AAD24578 (EMBL:AF126010) trehalose/maltose transport ATP-hydrolysing subunit from hyperthermophilic archaeon Thermococcus litoralis (372 aa) fasta scores; opt: 975, z-score: 1068.2, E(): 0, (50.1% identity in 335 aa overlap). Contains Pfam match to entry PF00005 ABC_tran, ABC transporter and Prosite matches to PS00211 ABC transporters family signature and PS00017 ATP/GTP-binding site motif A (P-loop). (445 aa)
SCO1898SCI7.16, possible sugar binding protein, len: 456aa; similar to many eg. TR:O30831 (EMBL:AF018073) periplasmic sorbitol binding protein from Rhodobacter sphaeroides (436 aa) fasta scores; opt: 1203, z-score: 1347.3, E(): 0, (42.8% identity in 423 aa overlap). Contains possible N-terminal signal sequence. (456 aa)
SCO1899SCI7.17, possible integral membrane sugar transport protein, len: 314aa; similar to many eg. TR:O30832 (EMBL:AF018073) sorbitol/mannitol transport inner membrane protein from Rhodobacter sphaeroides (290 aa) fasta scores; opt: 722, z-score: 829.0, E(): 0, (40.6% identity in 276 aa overlap). Contains Pfam match to entry PF00528 BPD_transp, Binding-protein-dependent transport systems inner membrane component and Prosite match to PS00402 Binding-protein-dependent transport systems inner membrane comp sign. Also contains possible membrane spanning hydrophobic regions. (314 aa)
SCO1900SCI7.18, possible integral membrane sugar transport protein, len: 292aa; similar to many eg. TR:O30833 (EMBL:AF018073) sorbitol/mannitol transport inner membrane protein from Rhodobacter sphaeroides (276 aa) fasta scores; opt: 659, z-score: 770.4, E(): 0, (40.6% identity in 276 aa overlap). Contains Pfam match to entry PF00528 BPD_transp, Binding-protein-dependent transport systems inner membrane component. Also contains possible membrane spanning hydrophobic regions. (292 aa)
SCO2008SC7H2.22, possible branched chain amino acid binding protein, len: 481aa; similar to many eg. SW:LIVK_ECOLI leucine-specific binding protein from Escherichia coli (369 aa) fasta scores; opt: 360, z-score: 374.0, E(): 1.6e-13, (28.4% identity in 352 aa overlap). Contains possible N-terminal signal sequence. (418 aa)
SCO2009SC7H2.23, probable branched chain amino acid transport permease, len: 310aa; similar to many eg. SW:LIVH_SALTY high affinity branched chain amino acid transport permease from Salmonella typhimurium (308 aa) fasta scores; opt: 711, z-score: 782.4, E(): 0, (43.5% identity in 306 aa overlap). Contains possible membrane spanning hydrophobic regions; Belongs to the binding-protein-dependent transport system permease family. (310 aa)
SCO2010SC7H2.24, probable branched chain amino acid transport permease, len: 310aa; region from 200-608aa similar to many eg. SW:LIVM_SALTY high affinity branched chain amino acid transport permease from Salmonella typhimurium (425 aa) fasta scores; opt: 633, z-score: 702.7, E(): 8.1e-32, (36.8% identity in 400 aa overlap); Belongs to the binding-protein-dependent transport system permease family. (608 aa)
SCO2011SC7H2.25, probable branched chain amino acid transport ATP-binding protein, len: 309aa; similar to many eg. SW:LIVG_ECOLI branched chain amino acid transport ATP-binding protein from Escherichia coli (255 aa) fasta scores; opt: 770, z-score: 837.9, E(): 0, (46.8% identity in 250 aa overlap). Contains Pfam match to entry PF00005 ABC_tran, ABC transporter and Prosite match to PS00017 ATP/GTP-binding site motif A (P-loop). (309 aa)
SCO2012SC7H2.26, probable branched chain amino acid transport ATP-binding protein, len: 238aa; similar to many eg. SW:LIVF_ECOLI branched chain amino acid transport ATP-binding protein from Escherichia coli (237 aa) fasta scores; opt: 774, z-score: 860.8, E(): 0, (52.4% identity in 233 aa overlap). Contains Pfam match to entry PF00005 ABC_tran, ABC transporter and Prosite matches to PS00017 ATP/GTP-binding site motif A (P-loop) and PS00211 ABC transporters family signature. (238 aa)
SCO2229SC10B7.24c, malG, putative maltose permease, len: 303 aa; identical to previously sequenced TR:P72399 (EMBL:Y07706) Streptomyces coelicolor putative maltose permease MalG, 302 aa and similar to SW:MALG_ECOLI (EMBL:X02871) Escherichia coli maltose transport system permease protein MalG, 296 aa; fasta scores: opt: 476 z-score: 570.0 E(): 2.3e-24; 34.1% identity in 293 aa overlap. Contains Pfam match to entry PF00528 BPD_transp, Binding-protein-dependent transport systems inner membrane component and match to Prosite entry PS00402 Binding-protein-dependent transport systems inner membrane [...] (303 aa)
SCO2230SC10B7.25c, malF, putative maltose permease, len: 334 aa; identical to previously sequenced TR:P72398 (EMBL:Y07706) Streptomyces coelicolor putative maltose permease MalF, 334 aa and similar to SW:MALF_ECOLI (EMBL:J01648) Escherichia coli maltose transport system permease protein MalF, 514 aa; fasta scores: opt: 424 z-score: 504.4 E(): 1e-20; 33.9% identity in 239 aa overlap. Contains Pfam match to entry PF00528 BPD_transp, Binding-protein-dependent transport systems inner membrane component and match to Prosite entry PS00402 Binding-protein-dependent transport systems inner membrane c [...] (334 aa)
SCO2231SC10B7.26c, malE, putative maltose-binding protein, len: 423 aa; identical to previously sequenced TR:P72397 (EMBL:Y07706) Streptomyces coelicolor putative maltose-binding protein MalE, 423 aa and similar to SW:MALX_STRPN (EMBL:L08611) Streptococcus pneumoniae maltose/maltodextrin-binding protein precursor MalX, 423 aa; fasta scores: opt: 431 z-score: 470.1 E(): 8.4e-19; 28.1% identity in 434 aa overlap. Contains Pfam match to entry PF01547 SBP_bacterial_1, Bacterial extracellular solute-binding protein and two matches to Prosite entries PS00013 Prokaryotic membrane lipoprotein lipid a [...] (423 aa)
SCO2257SCC75A.03, probable ABC transporter, ATP-binding component, len: 365 aa. Highly similar to many ABC transport proteins e.g. Streptomyces peucetius SW:DRRA_STRPE(EMBL:M73758) daunorubicin resistance ATP-binding protein (330 aa), fasta scores opt: 922 z-score: 1009.0 E():0 48.9% identity in 329 aa overlap and Streptomyces antibioticus TR:Q53716(EMBL:L06249) ATP-binding protein OLEC-ORF4 involved in oleandomycin-resistance (325 aa), fasta scores opt: 1883 z-score: 2052.8 E():0 89.7% identity in 329 aa overlap. Also similar to several Streptomyces coelicolor putative ABC transporter ATP-bi [...] (365 aa)
SCO2258SCC75A.04, probable ABC-transporter, transmembrane component, len: 274 aa. Similar to many transport proteins including: Streptomyces peucetius SW:DRRB_STRPE(EMBL:M73758) daunorubicin resistance transmembrane protein (283 aa), fasta scores opt: 523 z-score: 593.2 E(): 1.2e-25 35.1% identity in 245 aa overlap and Streptomyces antibioticus TR:Q53717(EMBL:L06249) membrane protein OLEC-ORF5 involved in oleandomycin-resistance (273 aa), fasta scores opt: 1502 z-score: 1685.2 E():0 83.2% identity in 274 aa overlap. Contains multiple possible membrane spanning hydrophobic domains. (274 aa)
SCO2323SCC53.14, possible integral membrane protein, len: 379aa; contains possible membrane-spanning hydrophobic regions. (379 aa)
SCO2404SC4A7.32, probable sugar-binding receptor, len: 369 aa; similar to SW:CVE2_AGRTU (EMBL:X97456) Agrobacterium tumefaciens multiple sugar-binding periplasmic receptor chve precursor, ChvE, 354 aa; fasta scores: opt: 1391 z-score: 1497.2 E(): 0; 60.3% identity in 350 aa overlap. Contains possible signal peptide sequence, Pfam match to entry PF00532 Peripla_BP_like, Periplasmic binding proteins and LacI family and Prosite match correctly situated PS00013 Prokaryotic membrane lipoprotein lipid attachment site. (369 aa)
SCO2405SC4A7.24, probable sugar-transport ATP binding protein, len: 513 aa; similar to TR:AAD45713 (EMBL:AF160811) Bacillus stearothermophilus L-arabinose transport, ATP binding protein AraG, 513 aa; fasta scores: opt: 2220 z-score: 2417.4 E(): 0; 65.5% identity in 510 aa overlap and to SW:ALSA_ECOLI (EMBL:U14003) Escherichia coli D-allose transport ATP-binding protein AlsA, 510 aa; fasta scores: opt: 1200 z-score: 1308.3 E(): 0; 40.7% identity in 514 aa overlap. Contains two Pfam matches to entry PF00005 ABC_tran, ABC transporter and two matches to Prosite entries PS00017 ATP/GTP-binding sit [...] (525 aa)
SCO2406SC4A7.34, probable sugar transport permease, len: 414 aa; similar to TR:AAD45714 (EMBL:AF160811) Bacillus stearothermophilus L-arabinose membrane permease AraH, 407 aa; fasta scores: opt: 1448 z-score: 1515.1 E(): 0; 56.9% identity in 385 aa overlap and to SW:XYLH_HAEIN (EMBL:U32791) Haemophilus influenzae xylose transport permease protein XylH, 375 aa; fasta scores: opt: 970 z-score: 1017.9 E(): 0; 42.6% identity in 376 aa overlap. (414 aa)
SCO2414SC8A2.02c, possible secreted protein, len: 433 aa; similar to TR:O53972 (EMBL:AL022073) Mycobacterium tuberculosis hypothetical 46.7 kDa protein MTV051.09, 437 aa; fasta scores: opt: 529 z-score: 488.9 E(): 1e-19; 31.3% identity in 438 aa overlap. Contains Pfam match to entry PF02470 mce. Also contains possible N-terminal region signal peptide sequence. (433 aa)
SCO2415SC8A2.03c, possible secreted protein, len: 413 aa; similar to TR:O53971 (EMBL:AL022073) Mycobacterium tuberculosis hypothetical 40.2 kDa protein MTV051.08, 377 aa; fasta scores: opt: 685 z-score: 681.0 E(): 2.1e-30; 36.0% identity in 311 aa overlap. Contains Pfam match to entry PF02470 mce. Also contains possible N-terminal region signal peptide sequence. (413 aa)
SCO2416SC8A2.04c, possible secreted protein, len: 337 aa; similar to TR:O53970 (EMBL:AL022073) Mycobacterium tuberculosis hypothetical 44.4 kDa protein MTV051.07, 423 aa; fasta scores: opt: 596 z-score: 625.4 E(): 2.6e-27; 33.1% identity in 320 aa overlap. Contains Pfam match to entry PF02470 mce. Also contains possible N-terminal region signal peptide sequence. (337 aa)
SCO2417SC8A2.05c, possible secreted protein, len: 351 aa; similar to TR:O53969 (EMBL:AL022073) Mycobacterium tuberculosis hypothetical 43.7 kDa protein MTV051.06, 410 aa; fasta scores: opt: 683 z-score: 769.5 E(): 0; 33.4% identity in 368 aa overlap. Contains Pfam match to entry PF02470 mce. Also contains possible N-terminal region signal peptide sequence. (351 aa)
SCO2418SC8A2.06c, possible secreted protein, len: 354 aa; similar to TR:O53968 (EMBL:AL022073) Mycobacterium tuberculosis hypothetical 36.5 kDa protein MTV051.05, 342 aa; fasta scores: opt: 665 z-score: 735.0 E(): 0; 37.6% identity in 343 aa overlap. Contains Pfam match to entry PF02470 mce. Also contains possible N-terminal region signal peptide sequence. (354 aa)
SCO2419SC8A2.07c, possible secreted protein, len: 418 aa; similar to TR:O53967 (EMBL:AL022073) Mycobacterium tuberculosis mce-family protein MTV051.04, 425 aa; fasta scores: opt: 548 z-score: 564.7 E(): 6.2e-24; 33.0% identity in 367 aa overlap. Contains Pfam match to entry PF02470 mce. Also contains possible N-terminal region signal peptide sequence. (418 aa)
SCO2420SCC42.01c, possible ABC-transporter integral membrane protein (fragment), len: >161 aa; similar to TR:O53545 (EMBL:AL022022) Mycobacterium tuberculosis hypothetical 29.6 kD protein MTV023.07c, 280 aa; fasta scores: opt: 565 z-score: 630.0 E(): 1.3e-27; 54.5% identity in 154 aa overlap. Contains possible hydrophobic membrane spanning regions; SC8A2.08c, conserved hypothetical protein (fragment), len: >139 aa; similar to TR:O53966 (EMBL:AL022073) Mycobacterium tuberculosis hypothetical 28.1 kDa protein MTV051.03, 271 aa; fasta scores: opt: 474 z-score: 595.0 E(): 1.3e-25; 48.6% identity [...] (268 aa)
SCO2421SCC42.02c, possible ABC-transporter integral membrane protein, len: 254 aa; similar to TR:O53546 (EMBL:AL022022) Mycobacterium tuberculosis hypothetical 26.6 kD protein MTV023.08c, 254 aa; fasta scores: opt: 881 z-score: 1004.0 E(): 0; 50.8% identity in 242 aa overlap. Contains possible hydrophobic membrane spanning regions. (254 aa)
SCO2422SCC42.03c, possible ABC-transporter ATP-binding protein, len: 343 aa; similar to SW:YRBF_HAEIN (EMBL:U32788) Haemophilus influenzae hypothetical ABC-transporter ATP-binding protein HI1087, 264 aa; fasta scores: opt: 680 z-score: 686.6 E(): 8.9e-31; 41.4% identity in 244 aa overlap. Contains Pfam match to entry PF00005 ABC_tran, ABC transporter and matches to Prosite entries PS00017 ATP/GTP-binding site motif A (P-loop) and PS00211 ABC transporters family signature. (343 aa)
SCO2505SCC121.08, probable ABC-transporter metal-binding lipoprotein, len: 328 aa; similar to TR:O05703 (EMBL:Z71552) Streptococcus pneumoniae AdcA protein (fragment), 423 aa; fasta scores: opt: 551 z-score: 603.5 E(): 3.2e-26; 39.7% identity in 305 aa overlap and to SW:ZNUA_ECOLI (EMBL:U38702) Escherichia coli, high-affinity zinc uptake system protein ZnuA precursor ZnuA, 328 aa; fasta scores: opt: 294 z-score: 327.0 E(): 8e-11; 26.5% identity in 283 aa overlap. Contains Pfam match to entry PF01297 Lipoprotein_4 and match to Prosite entry PS00013 Prokaryotic membrane lipoprotein lipid attach [...] (328 aa)
SCO2506SCC121.09, probable metal transport ABC transporter, len: 256 aa; similar to TR:Q9XDA6 (EMBL:AF104349) Listeria monocytogenes ABC transporter ZurA, 257aa; fasta scores: opt: 468 z-score: 522.7 E(): 1e-21; 38.0% identity in 237 aa overlap and to SW:FHUC_ECOLI (EMBLX05810:) Escherichia coli ferrichrome transport ATP-binding protein FhuC, 265 aa; fasta scores: opt: 416 z-score: 465.6 E(): 1.5e-18; 34.8% identity in 256 aa overlap. Contains Pfam match to entry PF00005 ABC_tran and match to Prosite entry PS00017 ATP/GTP-binding site motif A (P-loop). (256 aa)
SCO2507SCC121.10, probable metal transport ABC transporter, len: 300 aa; similar to TR:Q9XDA5 (EMBLAF104349:) Listeria monocytogenes hydrophobic membrane protein ZurM, 295aa fasta scores: opt: 608 z-score: 697.8 E(): 1.8e-31; 34.7% identity in 288 aa overlap and to SW:ZNUB_ECOLI (EMBL:AE000280) Escherichia coli high-affinity Zinc uptake system membrane protein ZnuB, 261 aa; fasta scores: opt: 397 z-score: 459.6 E(): 3.3e-18; 27.3% identity in 245 aa overlap. Contains Pfam match to entry PF00950 ABC-3. (300 aa)
SCO2630SC8E4.05c, possible biotin synthase, len: 246 aa; similar to TR:AAF12013 (EMBL:AE002076) Deinococcus radiodurans biotin synthase putative DR2470, 229 aa; fasta scores: opt: 293 z-score: 315.9 E(): 3.5e-10; 33.0% identity in 209 aa overlap and to SW:BIOY_BACSH (EMBL:M29292) Bacillus sphaericus BioY protein, 196 aa; fasta scores: opt: 275 z-score: 299.1 E(): 3e-09; 35.5% identity in 155 aa overlap. Contains possible hydrophobic membrane spanning regions. (247 aa)
SCO2746ABC transporter protein, ATP binding component; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family. (517 aa)
SCO2747SCC57A.18, bifunctional carbohydrate binding and transport protein, len: 613 aa. The N-terminus is highly similar to many ribose transport system permeases e.g. Escherichia coli SW:RBSC_ECOLI(EMBL:L10328) ribose transport system permease protein RbsC (321 aa), fasta scores opt: 846 z-score: 833.8 E(): 0 47.1% identity in 310 aa overlap. The C-terminus is highly similar to many ribose-binding proteins e.g. Escherichia coli SW:RBSB_ECOLI(EMBL:K00511) D-ribose-binding periplasmic protein precursor (296 aa), fasta scores opt: 863 z-score: 847.0 E():0 46.9% identity in 303 aa overlap. Conta [...] (651 aa)
SCO2749Carbohydrate transport protein; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose. (129 aa)
SCO27952SCC13.03, probable sugar binding secreted protein, len: 441 aa; highly similar to TR:Q9X9R7 (EMBL:AJ009797) Streptomyces reticuli Cbp protein precursor (fragment) CebE, 444 aa; fasta scores: opt: 1490 z-score: 1672.5 E(): 0; 51.2% identity in 445 aa overlap and similar to SW:LACE_AGRRD (EMBL:X66596) Agrobacterium radiobacter Lactose-binding protein precursor LacE, 422 aa; fasta scores: opt: 263 z-score: 298.4 E(): 4.1e-09; 23.1% identity in 398 aa overlap. Contains Pfam match to entry PF01547 SBP_bacterial_1, Bacterial extracellular solute-binding protein and correctly situated match [...] (441 aa)
SCO27962SCC13.04, probable cellobiose transport permease, len: 337 aa; highly similar to TR:Q9X9R6 (EMBL:AJ009797) Streptomyces reticuli permease CebF protein, 305 aa; fasta scores: opt: 1416 z-score: 1722.4 E(): 0; 67.9% identity in 296 aa overlap. Contains Pfam match to entry PF00528 BPD_transp, Binding-protein-dependent transport systems inner membrane component and match to Prosite entry PS00402 Binding-protein-dependent transport systems inner membrane comp sign. Also contains possible hydrophobic membrane spanning regions. (337 aa)
SCO27972SCC13.05, probable cellobiose transport permease, len: 303 aa; highly similar to TR:Q9X9R5 (EMBL:AJ009797) Streptomyces reticuli permease CebG protein, 275 aa; fasta scores: opt: 1262 z-score: 1477.0 E(): 0; 67.8% identity in 276 aa overlap. Contains Pfam match to entry PF00528 BPD_transp, Binding-protein-dependent transport systems inner membrane component and match to Prosite entry PS00402 Binding-protein-dependent transport systems inner membrane comp sign. Also contains possible hydrophobic membrane spanning regions. (303 aa)
SCO2930SCE19A.30, probable permease membrane component, len: 215 aa; similar to components transporters involved in osmoregulation e.g. SW:PROW_BACSU (EMBL:U38418), proW, Bacillus subtilis glycine betaine/L-proline transport system permease protein (217 aa), fasta scores; opt: 413 z-score: 474.7 E(): 4.2e-19, 35.1% identity in 211 aa overlap. Similar to SCE19A.32, probable permease inner membrane component (290 aa) (33.8% identity in 207 aa overlap) and to SC9B1.11 (EMBL:AL049727) S.coelicolor probable ABC transport permease (221 aa) (31.3% identity in 195 aa overlap). Contains hydrophobic, p [...] (215 aa)
SCO2931SCE19A.31, probable ABC transporter ATP-binding protein, len: 424 aa; similar to many, including components of transporters involved in osmoregulation e.g. SW:PROV_BACSU (EMBL:U38418), proV, Bacillus subtilis glycine betaine/L-proline transport ATP-binding protein (404 aa), fasta scores; opt: 997 z-score: 1092.8 E(): 0, 45.7% identity in 359 aa overlap. Similar to SC9B1.09 (EMBL:AL049727) S.coelicolor ABC transporter ATP-binding subunit (386 aa) (49.0% identity in 365 aa overlap). Contains an approx. 20 aa N-terminal extension absent similar proteins. May be part of a multicomponent tr [...] (424 aa)
SCO2932SCE19A.32, probable permease membrane component, len: 290 aa; similar to many, including components of transporters involved in osmoregulation e.g. SW:PROW_BACSU (EMBL:U38418), proW, Bacillus subtilis glycine betaine/L-proline transport system permease protein (217 aa), fasta scores; opt: 429 z-score: 461.7 E(): 2.2e-18, 37.7% identity in 220 aa overlap. Similar to SCE19A.30, probable permease inner membrane component (215 aa) (33.5% identity in 209 aa overlap) and SC9B1.11 (EMBL:AL049727) probable ABC transport permease (221 aa) (37.6% identity in 186 aa overlap). Contains an approx. [...] (290 aa)
SCO2933SCE19A.33, probable permease binding-protein component, len: 322 aa; similar to SW:PROX_BACSU (EMBL:U38418), proX, Bacillus subtilis glycine betaine-binding protein precursor (313 aa), fasta scores; opt: 300 z-score: 341.4 E(): 1.1e-11, 27.5% identity in 320 aa overlap and to similar putative permease components. Similar to SC9B1.12 (EMBL:AL049727) S.coelicolor probable secreted substrate-binding protein (320 aa) (30.4% identity in 329 aa overlap). Contains a probable N-terminal signal sequence and appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site. [...] (322 aa)
SCO2944SCE59.03c, possible sugar transporter membrane protein, len: 281 aa; similar to TR:CAB59590 (EMBL:AL132662) Streptomyces coelicolor putative sugar transporter inner membrane protein SCF11.13, 285 aa; fasta scores: opt: 730 z-score: 883.7 E(): 0; 42.1% identity in 278 aa overlap and to TR:AAF11008 (EMBL:AE001988) Deinococcus radiodurans ABC transporter, permease protein, MalFG family DR1436, 283 aa; fasta scores: opt: 645 z-score: 781.7 E(): 0; 38.2% identity in 272 aa overlap. Contains Pfam match to entry PF00528 BPD_transp, Binding-protein-dependent transport systems inner membrane co [...] (281 aa)
SCO2945SCE59.04c, possible sugar transporter membrane protein, len: 316 aa; similar to TR:CAB59589 (EMBL:AL132662) Streptomyces coelicolor putative sugar transporter inner membrane protein SCF11.12, 302 aa; fasta scores: and to TR:CAB55533 (EMBL:AL117322) Streptomyces coelicolor putative binding-protein-dependent transport protein SCF1.13, 317 aa; fasta scores: opt: 527 z-score: 611.6 E(): 1.2e-26; 33.1% identity in 302 aa overlap. Contains Pfam match to entry PF00528 BPD_transp, Binding-protein-dependent transport systems inner membrane component. Contains also possible hydrophobic membrane [...] (316 aa)
SCO2946SCE59.05c, possible sugar transporter sugar-binding protein, len: 432 aa; similar to TR:CAB59588 (EMBL:AL132662) Streptomyces coelicolor putative sugar transporter sugar-binding protein SCF11.11, 422 aa; fasta scores: opt: 538 z-score: 581.0 E(): 6e-25; 27.0% identity in 429 aa overlap and to SW:MALX_STRPN (EMBL:L08611) Streptococcus pneumoniae maltose/maltodextrin-binding protein precursor MalX, 423 aa; fasta scores: opt: 299 z-score: 325.5 E(): 1e-10; 26.0% identity in 431 aa overlap. Contains Pfam match to entry PF01547 SBP_bacterial_1, Bacterial extracellular solute-binding protein [...] (432 aa)
SCO2968Putative cell division protein; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily. (305 aa)
SCO2969Cell division ATP-binding protein; Part of the ABC transporter FtsEX involved in cellular division. (229 aa)
SCO2978SCE50.06, possible secreted protein, len: 465 aa; similar to TR:Q55471 (EMBL:D64006) Synechocystis sp. hypothetical 46.5 kD protein, 421 aa; fasta scores: opt: 788 z-score: 803.7 E(): 0; 35.2% identity in 386 aa overlap, to C-terminal part of SW:MSME_STRMU (EMBL:M77351) Streptococcus mutans multiple sugar binding protein precursor MsmE, 420 aa; fasta scores: opt: 240 z-score: 249.6 E(): 1.9e-06; 25.7% identity in 303 aa overlap and to SW:AGLE_RHIME (EMBL:AF045609) Rhizobium meliloti (Sinorhizobium meliloti) alpha-glucosidase-binding periplasmic protein AglE precursor, 429 aa; fasta sco [...] (465 aa)
SCO2979SCE50.07, possible integral membrane transport protein, len: 427 aa; N-terminal and C-terminal regions both similar to TR:Q55472 (EMBL:D64006) Synechocystis sp. membrane bound sugar transport protein, 279 aa; fasta scores: opt: 307 z-score: 333.7 E(): 3.8e-11; 26.5% identity in 412 aa overlap. Contains Pfam match in C-terminal region to entry PF00528 BPD_transp, Binding-protein-dependent transport systems inner membrane component and match also in C-terminal region to Prosite entry PS00402 Binding-protein-dependent transport systems inner membrane comp sign. Contains possible N-termina [...] (427 aa)
SCO2980SCE50.08, possible integral membrane transport protein, len: 305 aa; similar to TR:Q55473 (EMBL:D64006) Synechocystis sp. membrane bound sugar transport protein, 298 aa; fasta scores: opt: 883 z-score: 1001.8 E(): 0; 44.5% identity in 272 aa overlap. Contains Pfam match to entry PF00528 BPD_transp, Binding-protein-dependent transport systems inner membrane component and match to Prosite entry PS00402 Binding-protein-dependent transport systems inner membrane comp sign. Contains also possible hydrophobic membrane spanning regions. (305 aa)
SCO2995SCE99.02, possible ABC transporter integral membrane protein, len: 318 aa; similar to TR:Q9X7V2 (EMBL:AL049485) Streptomyces coelicolor putative ABC transporter membrane component SC6A5.06, 309 aa; fasta scores: opt: 1393 z-score: 1546.8 E(): 0; 69.0% identity in 300 aa overlap and to SW:RFA1_KLEPN (EMBL:L31775) Klebsiella pneumoniae O-antigen export system permease protein RfbA, 259 aa; fasta scores: opt: 327 z-score: 370.8 E(): 4.1e-13; 26.6% identity in 199 aa overlap. Contains Pfam match to entry PF01061 ABC2_membrane, ABC-2 type transporter and possible hydrophobic membrane spanni [...] (318 aa)
SCO2996SCE99.03, possible ABC transporter ATP-binding protein, len: 288 aa; similar to SW:RFB1_KLEPN (EMBL:L31775) Klebsiella pneumoniae O-antigen export system ATP-binding protein RfbB, 246 aa; fasta scores: opt: 550 z-score: 504.2 E(): 1.5e-20; 40.2% identity in 209 aa overlap and to TR:Q9X7V3 (EMBL:AL049085) Streptomyces coelicolor putative ABC transporter ATP-binding component SC6A5.07, 253 aa; fasta scores: opt: 1381 z-score: 963.7 E(): 0; 82.5% identity in 251 aa overlap. Contains Pfam match to entry PF00005 ABC_tran, ABC transporter and match to Prosite entry PS00017 ATP/GTP-binding si [...] (288 aa)
SCO3159SCE87.10, possible membrane protein, len: 353 aa. Weakly similar to Salmonella typhimurium SW:CBIM_SALTY (EMBL:L12006) cobalamin biosynthesis protein CbiM (245 aa), fasta scores opt: 224 z-score: 251.7 E(): 1.2e-06 32.8% identity in 180 aa overlap. Also similar to Methanobacterium thermoautotrophicum TR: O27742 (EMBL:AE000928) cobalamin biosynthesis protein M (217 aa), fasta scores opt: 495 z-score: 544.6 E(): 5.9e-23 41.4% identity in 220 aa overlap. Contains multiple possible membrane spanning hydrophobic domains and a possible N-terminal signal sequence. (353 aa)
SCO3160SCE87.11, possible integral membrane transport protein, len: 253 aa. Similar to many proteins thought to be involved in the transport of cobalt e.g. Streptomyces coelicolor TR:O54188(EMBL:AL021411) cobalt transport integral membrane protein SC7H1.29c (CbiQ) (249 aa), fasta scores opt: 196 z-score: 249.6 E(): 1.6e-06 25.5% identity in 251 aa overlap and Methanobacterium thermoautotrophicum TR:O27740(EMBL:AE000928) cobalt transport membrane protein (261 aa), fasta scores opt: 332 z-score: 417.0 E(): 7.5e-16 30.2% identity in 212 aa overlap. Contains multiple possible membrane spanning hy [...] (253 aa)
SCO3161Putative ABC transport protein, ATP-binding subunit; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity). (260 aa)
SCO3667SCH44.07c, probable secreted solute-binding protein, len: 372 aa; similar to TR:O50503 (EMBL:AL009199) Streptomyces coelicolor possible solute-binding protein SC7B7.06, 371 aa; fasta scores: opt: 1441 z-score: 1539.7 E(): 0; 60.6% identity in 376 aa overlap and to SW:XYLF_ECOLI (EMBL:U00039) Escherichia coli D-xylose-binding periplasmic protein precursor XylF, 330 aa; fasta scores: opt: 559 z-score: 602.9 E(): 4.1e-26; 34.3% identity in 318 aa overlap. Contains Pfam match to entry PF00532 Peripla_BP_like, Periplasmic binding proteins and sugar binding domain of the LacI family and corr [...] (372 aa)
SCO3704SCH35.20c, possible substrate-binding transport protein, len: 269aa; similar to many egs. TR:O31229 (EMBL:Y10817) molybdate-binding periplasmic transport protein from Arthrobacter nicotinovorans (260 aa) fasta scores; opt: 613, z-score: 670.6, E(): 5e-30, (43.4% identity in 256 aa overlap) and SW:MODA_ECOLI molybdate-binding periplasmic transport protein from Escherichia coli (257 aa) fasta scores; opt: 163, z-score: 186.1, E(): 0.0049, (31.7% identity in 249 aa overlap). Contains possible N-terminal signal sequence. (269 aa)
SCO3705Putative ABC transporter membrane subunit; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. (283 aa)
SCO3706SCH35.18c, probable ABC transporter ATP-binding subunit, len: 374aa; similar to many egs. TR:O31231 (EMBL:Y10817) from Arthrobacter nicotinovorans (349 aa) fasta scores; opt: 816, z-score: 875.0, E(): 0, (43.2% identity in 340 aa overlap) and TR:O86751 (EMBL:AL031035) putative ABC transporter ATP-binding subunit from Streptomyces coelicolor (348 aa) fasta scores; opt: 653, z-score: 701.9, E(): 9e-32, (38.6% identity in 321 aa overlap). Contains Pfam match to entry PF00005 ABC_tran, ABC transporter and Prosite matches to PS00211 ABC transporters family signature and PS00017 ATP/GTP-bind [...] (374 aa)
SCO3947SCD78.14, cydCD, probable ABC transporter, len: 1172 aa; N-terminal similarity to CYDD_ECOLI (EMBL:L21749) ABC transporter ATP-binding protein from Escherichia coli (588 aa), fasta scores; opt: 736, z-score: 950.9, E(): 0, (39.2% identity in525 aa overlap) and CYDC_BACSU (EMBL :D83026) ABC transporter ATP-binding protein from Bacillus subtilis (567 aa), fasta scores; opt: 1174, z-score:949.4, E(): 0 (36.0% identity in 566 aa overlap). Also has full length similarity to MDR4_DROME (EMBL:M59076) multidrug resistance protein homolog from Drosophila melanogaster fasta scores; opt: 575,z-sc [...] (1172 aa)
SCO4139Phosphate ABC transport system ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family. (258 aa)
SCO4140SCD84.07c, pstA, phosphate ABC transport system permease protein, len: 354 aa; similar to TR:O86345 (EMBL:X75297) Mycobacterium tuberculosis phosphate transport system permease protein PstA1 aa; fasta scores: opt: 870 z-score: 1011.0 E(): 0; 48.4% identity in 281 aa overlap and to SW:PSTA_ECOLI (EMBL:X02723) Escherichia coli phosphate transport system permease protein PstA or PhoT, 296 aa; fasta scores: opt: 605 z-score: 705.5 E(): 7.7e-32; 37.2% identity in 277 aa overlap. Contains Pfam match to entry PF00528 BPD_transp, Binding-protein-dependent transport systems inner membrane compo [...] (354 aa)
SCO4141Phosphate ABC transport system permease protein; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. (336 aa)
SCO4142Phosphate-binding protein precursor; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family. (370 aa)
SCO4240ABC transporter ATP-binding protein; Part of the ABC transporter complexes DasABC-MsiK and NgcEFG- MsiK involved in N,N'-diacetylchitobiose ((GlcNAc)2) uptake. Responsible for energy coupling to the transport system. (378 aa)
SCO4830SC2A6.15, probable glycine betaine ABC transport system ATP-binding protein, len: 394 aa; similar to SW:OPAA_BACSU (EMBL:U17292) Bacillus subtilis glycine betaine transport ATP-binding protein OpuAa, 418 aa; fasta scores: opt: 1015 z-score: 1043.6 E(): 0; 48.5% identity in 338 aa overlap. Contains Pfam match to entry PF00005 ABC_tran, ABC transporter and matches to Prosite entries PS00017 ATP/GTP-binding site motif A (P-loop) and PS00211 ABC transporters family signature. (394 aa)
SCO4831SC2A6.16, probable glycine betaine ABC transport system integral membrane protein, len: 648 aa; N-terminal domain similar to SW:OPAB_BACSU (EMBL:U17292) Bacillus subtilis glycine betaine transport system permease protein OpuAb aa; fasta scores: opt: 662 z-score: 724.1 E(): 7.5e-33; 38.7% identity in 269 aa overlap and C-terminal domain similar to TR:Q9RR45 (EMBL:AF039835) Listeria monocytogenes putative glycine betaine membrane transport protein GbuB, 282 aa; fasta scores: opt: 594 z-score: 650.5 E(): 9.5e-29; 36.5% identity in 263 aa overlap. Contains 2x Pfam matches to entry PF00528 [...] (648 aa)
SCO4832SC2A6.17, possible glycine betaine-binding lipoprotein, len: 322 aa; similar to SW:PROX_ECOLI (EMBL:M24856) Escherichia coli glycine betaine-binding periplasmic protein precursor ProX or ProU, 330 aa; fasta scores: opt: 112 z-score: 137.8 E(): 3.4; 21.8% identity in 325 aa overlap. Contains correctly situated match to Prosite entry PS00013 Prokaryotic membrane lipoprotein lipid attachment site and possible N-terminal region signal peptide sequence. (322 aa)
SCO48842SCK8.10, probable lipoprotein, len: 347 aa; similar to SW:YUFN_BACSU (EMBL:Z93937) Bacillus subtilis hypothetical lipoprotein precursor YufN, 350 aa; fasta scores: opt: 690 z-score: 727.5 E(): 0; 37.4% identity in 348 aa overlap, to TR:CAC14304 (EMBL:AJ276209) Clostridium sticklandii putative substrate binding lipoprotein precursor of an ABC transporter BmpA, 349 aa; fasta scores: opt: 557 z-score: 589.0 E(): 3.1e-25; 36.6% identity in 352 aa overlap and to Streptomyces coelicolor probable lipoprotein 2SCK8.11, 348 aa; fasta scores: opt: 1727 z-score: 1625.1 E(): 0; 78.4% identity in [...] (347 aa)
SCO48852SCK8.11, probable lipoprotein, len: 348 aa; similar to SW:YUFN_BACSU (EMBL:Z93937) Bacillus subtilis hypothetical lipoprotein precursor YufN, 350 aa; fasta scores: opt: 663 z-score: 689.2 E(): 8e-31; 36.8% identity in 334 aa overlap, to TR:CAC14304 (EMBL:AJ276209) Clostridium sticklandii putative substrate binding lipoprotein precursor of an ABC transporter BmpA, 349 aa; fasta scores: opt: 560 z-score: 583.6 E(): 6e-25; 36.1% identity in 355 aa overlap and to Streptomyces coelicolor probable lipoprotein 2SCK8.10, 347 aa; fasta scores: opt: 1727 z-score: 1622.6 E(): 0; 78.4% identity i [...] (348 aa)
SCO48862SCK8.12, probable sugar ABC transporter ATP-binding protein, len: 537 aa; similar to SW:MGLA_ECOLI (EMBL:M59444) Escherichia coli galactoside transport ATP-binding protein MglA, 506 aa; fasta scores: opt: 1019 z-score: 1013.7 E(): 0; 35.6% identity in 486 aa overlap. Contains 2x Pfam matches to entry PF00005 ABC_tran, ABC transporter and matches to Prosite entries PS00017 ATP/GTP-binding site motif A (P-loop) and PS00211 ABC transporters family signature. (537 aa)
SCO48872SCK8.13, probable sugar ABC transporter integral membrane protein, len: 374 aa; similar to TR:CAC14306 (EMBL:AJ276209) Clostridium sticklandii putative permease 1 of an ABC transporter RbsC-1, 354 aa; fasta scores: opt: 623 z-score: 693.9 E(): 4.4e-31; 33.3% identity in 342 aa overlap. Contains Pfam match to entry PF02653 BPD_transp_2 and possible hydrophobic membrane spanning regions; Belongs to the binding-protein-dependent transport system permease family. (374 aa)
SCO48882SCK8.14, probable sugar ABC transporter integral membrane protein, len: 424 aa; similar to TR:Q9WXW0 (EMBL:AE001696) Thermotoga maritima sugar ABC transporter, permease protein TM0105, 319 aa; fasta scores: opt: 395 z-score: 433.3 E(): 1.4e-16; 36.9% identity in 279 aa overlap. Contains possible hydrophobic membrane spanning regions. (424 aa)
SCO5117SC9E12.02, possible peptide transport system secreted peptide-binding protein, len: 544 aa; similar to SW:OPPA_BACSU (EMBL:X56347) Bacillus subtilis oligopeptide-binding protein OppA precursor, 545 aa; fasta scores: opt: 648 z-score: 642.6 E(): 2.5e-28; 26.1% identity in 552 aa overlap and to TR:P72407 (EMBL:U68036) Streptomyces coelicolor SpoOKA homologue BldKB, 602 aa; blastp scores: Score = 165 (58.1 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10; Identities = 116/502 (23%), Positives = 202/502 (40%). Contains 2x Pfam matches to entry PF00496 SBP_bac_5, Bacterial extracellular solute-b [...] (544 aa)
SCO5118SC9E12.03, probable peptide transport system integral membrane protein, len: 307 aa; similar to TR: SW:OPPB_BACSU (EMBL:X56347) Bacillus subtilis oligopeptide transport system permease protein OppB, 311 aa; fasta scores: opt: 688 z-score: 788.7 E(): 0; 36.0% identity in 308 aa overlap and to TR:P72408 (EMBL:U68036) Streptomyces coelicolor SpoOKC homologue BldKC, 323 aa; blastp scores: Score = 354 (124.6 bits), Expect = 1.9e-32, P = 1.9e-32; Identities = 82/235 (34%), Positives = 138/235 (58%). Contains Pfam match to entry PF00528 BPD_transp, Binding-protein-dependent transport systems [...] (307 aa)
SCO5119SC9E12.04, probable peptide transport system integral membrane protein, len: 305 aa; similar to SW:OPPC_BACSU (EMBL:X56347) Bacillus subtilis oligopeptide transport system permease protein OppC, 305 aa; fasta scores: opt: 670 z-score: 745.0 E(): 0; 35.5% identity in 296 aa overlap and to TR:P72406 (EMBL:U68036) Streptomyces coelicolor SpoOKB homologue BldKA, 335 aa; blastp scores: Score = 382 (134.5 bits), Expect = 9.1e-41, Sum P(2) = 9.1e-41; Identities = 88/231 (38%), Positives = 134/231 (58%). Contains Pfam match to entry PF00528 BPD_transp, Binding-protein-dependent transport syste [...] (305 aa)
SCO5120SC9E12.05, probable peptide transport system ATP-binding protein, len: 327 aa; similar to SW:OPPD_BACSU (EMBL:X56347) Bacillus subtilis oligopeptide transport system ATP-binding protein OppD, 358 aa; fasta scores: opt: 1126 z-score: 1167.7 E(): 0; 53.9% identity in 310 aa overlap, to TR:P72409 (EMBL:U68036) Streptomyces coelicolor putative ABC transporter intracellular ATPase subunit BldKD, 353 aa; fasta scores: opt: 1035 z-score: 1074.2 E(): 0; 51.5% identity in 326 aa overlap and to TR:O86574 (EMBL:AL031184) Streptomyces coelicolor oligopeptide ABC transporter ATP-binding protein SC2 [...] (327 aa)
SCO5121SC9E12.06, probable peptide transport system ATP-binding protein, len: 356 aa; similar to SW:APPF_BACSU (EMBL:U20909) Bacillus subtilis oligopeptide transport ATP-binding protein AppF, 329 aa; fasta scores: opt: 1255 z-score: 1332.6 E(): 0; 57.3% identity in 335 aa overlap, to TR:P72410 (EMBL:U68036) Streptomyces coelicolor putative ABC transporter intracellular ATPase subunit BldKE (fragment), 284 aa; fasta scores: opt: 999 z-score: 1063.6 E(): 0; 58.1% identity in 260 aa overlap and to TR:O86575 (EMBL:AL031184) Streptomyces coelicolor oligopeptide ABC transporter ATP-binding protein [...] (356 aa)
SCO5232Putative sugar transporter sugar binding protein; Part of the ABC transporter complex DasABC-MsiK involved in N,N'-diacetylchitobiose ((GlcNAc)2) uptake. Binds specifically to (GlcNAc)2. Can also bind to GlcNAc, (GlcNAc)3, (GlcNAc)4 and (GlcNAc)5, but it exhibits the highest affinity for (GlcNAc)2. Involved in the control of morphological differentiation. (425 aa)
SCO5233Putative sugar transporter integral membrane protein; Part of the ABC transporter complex DasABC-MsiK involved in N,N'-diacetylchitobiose ((GlcNAc)2) uptake. Responsible for the translocation of the substrate across the membrane. Belongs to the binding-protein-dependent transport system permease family. (328 aa)
SCO5234Putative sugar transporter integral membrane protein; Part of the ABC transporter complex DasABC-MsiK involved in N,N'-diacetylchitobiose ((GlcNAc)2) uptake. Responsible for the translocation of the substrate across the membrane. Belongs to the binding-protein-dependent transport system permease family. (276 aa)
SCO5646SC6A9.21c, probable solute binding lipoprotein, len: 373 aa; similar to e.g. TBPA_ECOLI thiamin-binding periplasmic protein (327 aa), fasta scores; opt: 220 z-score: 423.3 E(): 2.4e-16, 28.4% identity in 327 aa overlap. Contains N-terminla signal sequence and appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site. (373 aa)
SCO5647SC6A9.20c, probable ABC transporter integral membrane protein, len: 553 aa; similar to many e.g. Y4FN_RHISN probable ABC transporter permease protein (569 aa), fasta scores; opt: 296 z-score: 555.5 E(): 1e-23, 25.4% identity in 563 aa overlap. Contains 2x Pfam match to entry PF00528 BPD_transp, Binding-protein-dependent transport systems inner membrane component, scores 40.70, E-value 3.2e-08 and 46.50, E-value 6.1e-10. (553 aa)
SCO5648ABC transporter ATP binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system. (348 aa)
SCO5658SC6A9.09c, possible polyamine-binding lipoprotein, len: 399 aa; some similarity to several spermidine. (399 aa)
SCO5667SC8B7.11c, probable ABC-transporter polyamine-binding lipoprotein, len: 399 aa; similar to e.g. POTF_ECOLI putrescine-binding periplasmic protein precursor (370 aa), fasta scores; opt: 327 z-score: 259.5 E(): 3.4e-07, 28.5% identity in 365 aa overlap. Also similar to upstream gene SC6A9.09c (E(): 0, 46.8% identity in 391 aa overlap). Contains PS00013 Prokaryotic membrane lipoprotein lipid attachment site and PS00017 ATP/GTP-binding site motif A (P-loop). Contains possible N-terminal region signal sequence peptide. (399 aa)
SCO5668Putative polyamine ABC-transporter ATP-binding p rotein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (397 aa)
SCO5669SC8B7.09c, probable polyamine ABC-transporter integr al membrane protein, len: 309 aa; similar to many e.g. POTB _ECOLI spermidine/putrescine transport system permease (275 aa), fasta scores; opt: 548 z-score: 685.1 E(): 6.6e-31, 3 6.9% identity in 274 aa overlap. Contains Pfam match to ent ry PF00528 BPD_transp, Binding-protein-dependent transport systems inner membrane component, score 38.20, E-value 1.8e -07. (309 aa)
SCO5670SC8B7.08c, probable polyamine ABC-transporter integr al membrane protein, len: 266 aa; similar to many e.g. POTC _ECOLI spermidine/putrescine transport system permease (264 aa), fasta scores; opt: 579 z-score: 718.8 E(): 8.8e-33, 3 5.5% identity in 251 aa overlap. Contains Pfam match to ent ry PF00528 BPD_transp, Binding-protein-dependent transport systems inner membrane component, score 23.00, E-value 0.00 7. (266 aa)
SCO5686SC5H4.10, probable lipoprotein, len: 561 aa; similar to SW:LPLA_BACSU (EMBL:L03376) Bacillus subtilis LplA, 502 aa; fasta scores: opt: 364 z-score: 402.3 E(): 6e-15; 23.6% identity in 483 aa overlap. Contains correctly situated match to Prosite entry PS00013 Prokaryotic membrane lipoprotein lipid attachment site, possible N-terminal region signal peptide sequence and possible colied-coil region at residues 562..575. (561 aa)
SCO5687SC5H4.11, probable transport system integral membrane protein, len: 346 aa; similar to SW:LPLB_BACSU (EMBL:L19163) Bacillus subtilis LplB protein, 318 aa; fasta scores: opt: 814 z-score: 950.7 E(): 0; 38.2% identity in 309 aa overlap. Contains Pfam match to entry PF00528 BPD_transp, Binding-protein-dependent transport systems inner membrane component and match to Prosite entry PS00402 Binding-protein-dependent transport systems inner membrane comp sign. Contains also possible hydrophobic membrane spanning regions. (346 aa)
SCO5688SC5H4.12, probable transport system integral membrane protein, len: 323 aa; similar to SW:LPLC_BACSU (EMBL:L19164) Bacillus subtilis LplC, 295 aa; fasta scores: opt: 669 z-score: 758.9 E(): 0; 38.0% identity in 276 aa overlap. Contains Pfam match to entry PF00528 BPD_transp, Binding-protein-dependent transport systems inner membrane component. Contains also possible hydrophobic membrane spanning regions. (323 aa)
SCO5774SC4H8.13c, gluD, probable glutamate permease, len: 299; similar to many members of the HisMQ subfamily of the binding-protein dependent transporters eg. GLUD_CORGL P48245 glutamate transport system permease protein from Corynebacterium glutamicum (273 aa), fasta scores; opt: 673 z-score: 843.4 E(): 0, 47.0% identity in 251 aa overlap. Contains PS00402 Binding-protein-dependent transport systems inner membrane component signature. (299 aa)
SCO5775SC4H8.14c, gluC, probable glutamate permease, len: 222; similar to many members of the HisMQ subfamily of the binding-protein dependent transporters eg. GLUC_CORGL P48244 glutamate transport system permease protein from Corynebacterium glutamicum (225 aa), fasta scores; opt: 730 z-score: 1209.4 E(): 0, 58.8% identity in 199 aa overlap. Contains PS00402 Binding-protein-dependent transport systems inner membrane component signature. (222 aa)
SCO5776SC4H8.15c, gluB, probable glutamate binding protein, len: 278 aa; similar to many members of the periplasmic solute-binding family 3 eg. GLUB_CORGL P48242 glutamate-binding protein precursor from Corynebacterium glutamicum (295 aa), fasta scores; opt: 733 z-score: 768.3 E(): 0, 46.9% identity in 277 aa overlap. Contains N-terminal signal sequence and appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site; also contains PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. (278 aa)
SCO5777SC4H8.16c, gluA, probable glutamate uptake system ATP-binding protein, len: 258 aa; highly similar to many amino-acid uptake ATP-binding proteins eg. GLUA_CORGL P48243 glutamate transport atp-binding protein from Corynebacterium gluamicum (242 aa), fasta scores; opt: 1152 z-score: 1564.5 E(): 0, 71.5% identity in 242 aa overlap. Contains PS00017 ATP/GTP-binding site motif A (P-loop) and PS00211 ABC transporters family signature. (258 aa)
SCO5923SC10A5.28c, ABC-transporter ATP-binding protein, len : 361 aa; similar to many eg. Streptomyces reticuli TR:P964 83 (EMBL:Y08921) MSIK PROTEIN involved in in cellobiose and maltose transport(377 aa), opt: 809 z-score: 1069.1 E(): 0, 40.4% identity in 381 aa overlap. Contains PS00017 ATP/GT P-binding site motif A (P-loop). PS00211 ABC transporters f amily signature and Pfam match to entry ABC_tran PF00005, A BC transporters, score 35.90. (361 aa)
SCO5924SC10A5.29c, probable integral membrane protein, len: 589 aa; similar to many permeases eg. TR:Q44123 (EMBL:U050 42) iron utilisation protein AFUB from Actinobacillus pleur opneumoniae (687 aa), fasta scores; opt: 564 z-score: 426.3 E(): 1.5e-16, 25.0% identity in 547 aa overlap. (589 aa)
SCO5958Cobalt transport system ATP binding protein; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity). (284 aa)
SCO5959SC7H1.29c, cbiQ, probable cobalt transport integral membrane protein, len: 249 aa; similar to eg. CBIQ_SALTY Q05598 cobalt transport protein cbiq (225 aa), fasta scores; opt: 182 z-score: 241.4 E(): 3e-06, 28.1% identity in 228 aa overlap. (249 aa)
SCO5960Puative cobalt transport protein; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import; Belongs to the CbiN family. (118 aa)
SCO5961Puative cobalt transport protein; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import. (257 aa)
SCO6005Putative lipoprotein; Part of the ABC transporter complex NgcEFG-MsiK involved in N,N'-diacetylchitobiose ((GlcNAc)2) uptake. Binds (GlcNAc)2. Can also bind GlcNAc; Belongs to the bacterial solute-binding protein 1 family. (469 aa)
SCO6006Probable transmembrane transport protein; Part of the ABC transporter complex NgcEFG-MsiK involved in N,N'-diacetylchitobiose ((GlcNAc)2) uptake. Responsible for the translocation of the substrate across the membrane. Belongs to the binding-protein-dependent transport system permease family. (353 aa)
SCO6007Probable transmembrane transport protein; Part of the ABC transporter complex NgcEFG-MsiK involved in N,N'-diacetylchitobiose ((GlcNAc)2) uptake. Responsible for the translocation of the substrate across the membrane. Belongs to the binding-protein-dependent transport system permease family. (302 aa)
SCO6009SC7B7.06, probable solute-binding protein of transmembrane transport system, len: 403 aa; similar to many eg. XYLF_ECOLI P37387 d-xylose-binding periplasmic protein precursor (330 aa), fasta scores; opt: 619 z-score: 573.4 E(): 8.9e-25, 35.7% identity in 325 aa overlap. Contains N-terminal signal sequence and appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site. (371 aa)
SCO6010SC7B7.07, probable ABC-transport system ATP binding protein, len: 260 aa; similar to many eg. XYLG_ECOLI P37388 d-xylose transport atp-binding protein (513 aa), fasta scores; opt: 567 z-score: 580.0 E(): 3.8e-25, 36.5% identity in 255 aa overlap. Contains PS00017 ATP/GTP-binding site motif A (P-loop) and PS00211 ABC transporters family signature. Possible alternative start 9 bp upstream. (260 aa)
SCO6011SC7B7.08, probable ABC-type trans- membrane transport protein, len: 430 aa; similar to many others of the ARAH/RBSC subfamily of the binding-protein dependent transport systems eg. XYLH_ECOLI P37389 xylose transport permease protein xylH (393 aa), fasta scores; opt: 695 z-score: 690.3 E(): 2.7e-31, 34.2% identity in 377 aa overlap. Possible alternative start site 33 aa downstream. (430 aa)
SCO6062SC9B1.09, ABC transporter ATP-binding subunit, len: 386aa; similar to many eg. TR:O69724 (EMBL:AL022121) putative ABC transporter ATP-binding subunit from Mycobacterium tuberculosis (376 aa) fasta scores; opt: 1147, z-score: 1185.4, E(): 0, (51.2% identity in 371 aa overlap) and SW:PROV_BACSU glycine betaine/L-proline transport ATP-binding protein (404 aa) fasta scores; opt: 849, z-score: 879.1, E(): 0, (39.8% identity in 359 aa overlap). Contains Pfam match to entry PF00005 ABC_tran, ABC transporter and Prosite matches to PS00017 ATP/GTP-binding site motif A (P-loop) and PS00211 ABC t [...] (386 aa)
SCO6063SC9B1.10, probable ABC transport permease, len: 237aa; similar to many eg. TR:O69723 (EMBL:AL022121) transport system permease from Mycobacterium tuberculosis (229 aa) fasta scores; opt: 436, z-score: 523.9, E(): 7.4e-22, (36.4% identity in 214 aa overlap) and SW:PROZ_BACSU glycine betaine/L-proline transport permease from Bacillus subtilis (223 aa) fasta scores; opt: 291, z-score: 353.3, E(): 2.3e-12, (29.1% identity in 199 aa overlap). Contains Pfam match to entry PF00528 BPD_transp, Binding-protein-dependent transport systems inner membrane component. (237 aa)
SCO6064SC9B1.11, probable ABC transport permease, len: 221aa; similar to many eg. TR:O69722 (EMBL:AL022121) transport system permease from Mycobacterium tuberculosis (239 aa) fasta scores; opt: 643, z-score: 736.8, E(): 0, (47.7% identity in 220 aa overlap) and SW:PROW_BACSU glycine betaine/L-proline transport permease from Bacillus subtilis (217 aa) fasta scores; opt: 358, z-score: 415.9, E(): 7.6e-16, (28.2% identity in 195 aa overlap). Contains Pfam match to entry PF00528 BPD_transp, Binding-protein-dependent transport systems inner membrane component. (221 aa)
SCO6065SC9B1.12, probable secreted substrate-binding protein, len: 320aa; similar to many eg. TR:O69725 (EMBL:AL022121) hypothetical protein from Mycobacterium tuberculosis (315 aa) fasta scores; opt: 574, z-score: 637.7, E(): 3.4e-28, (35.8% identity in 313 aa overlap) and SW:PROX_BACSU glycine betaine/L-proline binding protein from Bacillus subtilis (313 aa) fasta scores; opt: 136, z-score: 157.8, E(): 0.18, (25.7% identity in 311 aa overlap). Contains possible N-terminal signal sequence. (320 aa)
SCO6567SC3F9.02, ABC transporter ATP binding protein, len:505 aa; similar to many sugar transport proteins e.g. ARAG_ECOLI l-arabinose transport atp-binding protein (504 aa), fasta scores; opt: 1312 z-score: 1412.8 E(): 0, 42.1% identity in 501 aa overlap andRBSA_HAEIN ribose transport atp-binding protein rbsA (493 aa), fasta scores; opt: 1160 z-score: 1216.7 E(): 0, 40.7% identity in 489 aa overlap. Contains PS00017 ATP/GTP-binding site motif A (P-loop), PS00211 ABC transporters family signature and Pfam match to entry ABC_tran PF00005, ABC transporters, score 197.70. (505 aa)
SCO6568SC3F9.03, ABC transporter integral membrane protein, len: 339 aa; similar to many involved in sugar transport e.g. RBSC_BACSU ribose transport system permease protein (323 aa), fasta scores; opt: 700 z-score: 958.9 E(): 0, 39.5%identity in 314 aa overlap. (339 aa)
SCO6569SC3F9.04, probable secreted solute binding protein, len: 348 aa; similar to many e.g. RBSB_HAEIN D-ribose-binding periplasmic protein precursor (292 aa), fasta scores; opt: 341 z-score: 284.7 E(): 1.2e-08, 29.2% identity in 271 aa overlap. Contains N-terminal signal sequence and appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site. (348 aa)
SCO6757SC6A5.06, probable ABC transporter membrane component, len: 309aa; similar to many eg. TR:O66230 (EMBL:AB010150) ABC transporter membrane component from Escherichia coli (264 aa) fasta scores; opt: 346, z-score: 414.3, E(): 8.9e-16, (27.3% identity in 267 aa overlap). Contains Pfam match to entry PF01061 ABC2_membrane, ABC-2 type transporter, score 109.60, E-value 6.1e-29 and Prosite match to PS00211 ABC transporters family signature. Also contains probable membrane spanning hydrophobic regions. (309 aa)
SCO6758SC6A5.07, probable ABC transporter ATP-binding component, len: 253aa; similar to many eg. SW:TAGH_BACSU TagH, ABC transporter ATP-binding component from Bacillus subtilis (527 aa) fasta scores; opt: 621, z-score: 686.7, E(): 6e-31, (48.5% identity in 202 aa overlap). Contains Pfam match to entry PF00005 ABC_tran, ABC transporter, score 123.70, E-value 3.4e-33 and Prosite matches to PS00017 ATP/GTP-binding site motif A (P-loop) and PS00211 ABC transporters family signature. (253 aa)
SCO6814SC1A2.23c, possible ABC transport protein ATP-binding component, len: 223 aa. Similar to many ABC transporters including: Deinococcus radiodurans TR:AAF12204 (EMBL:AE001862) phosphate ABC transporter, ATP-binding protein (254 aa), fasta scores opt: 458 z-score: 524.0 E(): 8.7e-22 38.1% identity in 210 aa overlap and Escherichia coli SW:PSTB_ECOLI (EMBL:X02723) phosphate ABC transporter, ATP-binding protein, PstB(257 aa), fasta scores opt: 436 z-score: 499.3 E(): 2.1e-20 38.9% identity in 198 aa overlap. Contains Prosite hits to PS00211 ABC transporters family signature and PS00017 ATP/ [...] (223 aa)
SCO6815Bi-domain ABC transporter permease protein; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane.; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. (603 aa)
SCO6816SC1A2.25c, possible ABC transporter binding lipoprotein, len: 290 aa. Similar to several including: Escherichia coli SW:PSTS_ECOLI (EMBL:K01992) phosphate-binding protein precursor (346 aa), fasta scores opt: 158 z-score: 176.7 E(): 0.019 25.9% identity in 259 aa overlap and Methanobacterium thermoautotrophicum TR:O27760 (EMBL:AE000929) phosphate-binding protein, PstS (271 aa), fasta scores opt: 510 z-score: 554.5 E(): 1.8e-23 34.9% identity in 281 aa overlap. Contains an appropriately positioned Prosite hit to PS00013 Prokaryotic membrane lipoprotein lipid attachment site, a Pfam matc [...] (290 aa)
SCO7028Putative sugar-binding lipoprotein; SC1H10.17, possible sugar-binding lipoprotein, len: 434 aa. Identical to Streptomyces lividans TR:Q9Z492 (EMBL:AF043654) putative sugar-binding protein, BxlE (434 aa), fasta scores opt: 2892 z-score: 3295.8 E():0 99.5% identity in 434 aa overlap. Also similar to Streptococcus mutans SW:MSME_STRMU(EMBL:M77351) multiple sugar-binding protein precursor, MsmE (420 aa), fasta scores opt: 308 z-score: 353.5 E(): 2.9e-12 24.0% identity in 383 aa overlap. Contains a possible N-terminal signal sequence and an appropriately positioned Prosite hit to PS00013 Pr [...] (434 aa)
SCO7029SC1H10.18, possible binding-protein-dependent transport protein, len: 318 aa. Almost identical to Streptomyces lividans TR:Q9ZI17 (EMBL:AF043654) putative permease, BxlF (317 aa), fasta scores opt:2000 z-score: 2320.3 E():0 98.1% identity in 318 aa overlap. Also similar to Streptococcus mutans SW:MSMF_STRMU(EMBL:M77351) multiple sugar-binding transport system permease protein, MsmF (290 aa), fasta scores opt: 447 z-score: 524.7 E(): 8.3e-22 29.9% identity in 271 aa overlap and Streptomyces coelicolor TR:CAB54176(EMBL:AL110470) putative binding-protein-dependent transport protein, SCF85 [...] (318 aa)
SCO7030SC1H10.19, possible binding-protein-dependent transport protein, len: 310 aa. Almost identical to Streptomyces lividans TR:Q9ZI16 (EMBL:AF043654) putative permease, BxlG (272 aa), fasta scores opt: 1714 z-score: 2067.9 E():0 98.5% identity in 272 aa overlap. Also similar to Streptococcus mutans SW:MSMG_STRMU(EMBL:M77351) multiple sugar-binding transport system permease protein, MsmG (277 aa), fasta scores opt: 441 z-score: 537.9 E(): 1.5e-22 28.0% identity in 254 aa overlap. Contains a Pfam match to entry PF00528 BPD_transp, Binding-protein-dependent transport systems inner membrane co [...] (272 aa)
SCO7165SC9A4.27c, probable sugar-binding integral membrane transport protein, len: 319 aa; similar to TR:Q9RJV6 (EMBL:AL117387) Streptomyces coelicolor putative binding-protein-dependent transport protein SCF41.13, 280 aa; fasta scores: opt: 1039 z-score: 1201.7 E(): 0; 57.2% identity in 264 aa overlap and to SW:MSMG_STRMU (EMBL:M77351) Streptococcus mutans multiple sugar-binding transport system permease protein MsmG, 277 aa; fasta scores: opt: 512 z-score: 596.7 E(): 9.1e-26; 32.4% identity in 275 aa overlap. Contains Pfam match to entry PF00528 BPD_transp, Binding-protein-dependent transpo [...] (303 aa)
SCO7166SC9A4.28c, probable sugar-transporter integral membrane protein, len: 310 aa; similar to TR:Q9RJV7 (EMBL:AL117387) Streptomyces coelicolor putative binding protein dependent transport protein SCF41.12, 303 aa; fasta scores: opt: 913 z-score: 1073.6 E(): 0; 46.9% identity in 309 aa overlap. Contains Pfam match to entry PF00528 BPD_transp, Binding-protein-dependent transport systems inner membrane component and match to Prosite entry PS00402 Binding-protein-dependent transport systems inner membrane comp sign. Also contains possible hydrophobic membrane spanning regions. (310 aa)
SCO7181SC8A11.09, probable branched amino acid transport system ATP-binding protein, len: 261 aa; similar to SW:LIVG_ECOLI (EMBL:J05516) Escherichia coli high-affinity branched-chain amino acid transport ATP-binding protein LivG, 255 aa; fasta scores: opt: 586 z-score: 615.7 E(): 7.9e-27; 41.6% identity in 250 aa overlap. Contains Pfam match to entry PF00005 ABC_tran, ABC transporter and match to Prosite entry PS00017 ATP/GTP-binding site motif A (P-loop). (261 aa)
SCO7182SC8A11.10, probable branched amino acid transport system ATP-binding protein, len: 237 aa; similar to SW:LIVF_ECOLI (EMBL:J05516) Escherichia coli high-affinity branched-chain amino acid transport ATP-binding protein LivF, 237 aa; fasta scores: opt: 687 z-score: 739.1 E(): 0; 50.7% identity in 223 aa overlap. Contains Pfam match to entry PF00005 ABC_tran, ABC transporter and matches to Prosite entries PS00017 ATP/GTP-binding site motif A (P-loop) and PS00211 ABC transporters family signature. (237 aa)
SCO7183SC8A11.11, probable branched amino acid transport system permease, len: 290 aa; similar to SW:LIVH_ECOLI (EMBL:J05516) Escherichia coli high-affinity branched-chain amino acid transport system permease LivH, 308 aa; fasta scores: opt: 427 z-score: 471.1 E(): 9e-19; 34.4% identity in 305 aa overlap. Contains possible hydrophobic membrane spanning regions. (290 aa)
SCO7184SC8A11.12, probable branched amino acid transport system permease, len: 349 aa; similar to SW:LIVM_ECOLI (EMBL:J05516) Escherichia coli high-affinity branched-chain amino acid transport system permease, LivM, 425 aa; fasta scores: opt: 254 z-score: 285.7 E(): 1.9e-08; 28.1% identity in 360 aa overlap. Contains possible hydrophobic membrane spanning regions. (349 aa)
SCO7185SC8A11.13, probable branched amino acid binding secreted protein, len: 396 aa; similar to SW:LIVK_ECOLI (EMBL:M29378) Escherichia coli leucine-specific binding protein precursor LivK, 369 aa; fasta scores: opt: 233 z-score: 262.9 E(): 3.6e-07; 24.7% identity in 360 aa overlap. Contains correctly situated match to Prosite entry PS00013 Prokaryotic membrane lipoprotein lipid attachment site and possible N-terminal region signal peptide sequence. (396 aa)
SCO7398SC10G8.26c, possible membrane transport protein, len: 694 aa. Highly similar to many members of the FecCD family of binding protein-dependent transport proteins e.g. Escherichia coli SW:FHUB_ECOLI(EMBL:X04319) ferrichrome transport protein FhuB precursor (660 aa), fasta scores opt: 510 z-score:0.0 E(): 0.0 33.93% identity in 672 aa overlap. Contains 2xPfam match to entry PF01032 FecCD_family, FecCD transport family and multiple possible membrane spanning hydrophobic domains; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (694 aa)
SCO7399SC10G8.27c, possible binding-protein-dependent transport lipoprotein, len: 327 aa. Similar to many including: Escherichia coli SW:FHUD_ECOLI(EMBL:X05810) ferrichrome-binding periplasmic protein precursor FhuD (296 aa), fasta scores opt: 231 z-score: 249.9 E(): 1.7e-06 24.8% identity in 270 aa overlap. Contains a possible N-terminal signal sequence and an appropriately positioned Prosite hit to PS00013 Prokaryotic membrane lipoprotein lipid attachment site. Also contains a Pfam match to entry PF01497 Peripla_BP_2, Periplasmic binding protein. (327 aa)
SCO7400SC10G8.28c, possible ABC-transport protein, ATP-binding component, len: 292 aa. Highly similar to many e.g. Escherichia coli SW:FEPC_ECOLI(EMBL:X57471) ferric enterobactin transport ATP-binding protein, FepC (271 aa), fasta scores opt: 670 z-score: 720.4 E(): 1e-32 41.7% identity in 266 aa overlap and Escherichia coli SW:FHUC_ECOLI(EMBL:X05810) ferrichrome transport ATP-binding protein, FhuC (265 aa), fasta scores opt: 569 z-score: 613.5 E(): 9.2e-27 39.2% identity in 240 aa overlap. Also similar to Streptomyces coelicolor TR:CAB53325(EMBL:AL109974) putative iron-siderophore ABC-transp [...] (292 aa)
SCO7555SC5F1.09, possible solute binding lipoprotein, len: 436 aa; similar to TR:Q9L151 (EMBL:AL158061) Streptomyces coelicolor probable solute binding lipoprotein SC6D11.04c, 451 aa; fasta scores: opt: 386 z-score: 436.1 E(): 9.3e-17; 27.5% identity in 459 aa overlap. Contains Pfam match to entry PF01547 SBP_bacterial_1, Bacterial extracellular solute-binding protein and correctly situated match to Prosite entry PS00013 Prokaryotic membrane lipoprotein lipid attachment site. Also contains possible N-terminal signal peptide sequence. (436 aa)
SCO7556SC5F1.10, possible sugar transport permease, len: 331 aa; similar to TR:Q9X9R6 (EMBL:AJ009797) Streptomyces reticuli CebF protein, 305 aa; fasta scores: opt: 1258 z-score: 1401.2 E(): 0; 57.6% identity in 311 aa overlap and to TR:CAC10105 (EMBL:AL442165) Streptomyces coelicolor putative cellobiose transport permease 2SCC13.04, 337 aa; fasta scores: opt: 1343 z-score: 1424.3 E(): 0; 56.5% identity in 336 aa overlap. Contains Pfam match to entry PF00528 BPD_transp, Binding-protein-dependent transport systems inner membrane component and match to Prosite entry PS00402 Binding-protein-depe [...] (331 aa)
SCO7557SC5F1.11, possible sugar transport integral membrane protein, len: 307 aa; similar to TR:Q9X9R5 (EMBL:AJ009797) Streptomyces reticuli CebG protein, 275 aa; fasta scores: opt: 1165 z-score: 1331.6 E(): 0; 62.8% identity in 274 aa overlap and to TR:CAC10106 (EMBL:AL442165) Streptomyces coelicolor putative cellobiose transport permease 2SCC13.05, 303 aa; fasta scores: opt: 1236 z-score: 1261.9 E(): 0; 61.1% identity in 296 aa overlap. Contains Pfam match to entry PF00528 BPD_transp, Binding-protein-dependent transport systems inner membrane component. Also contains possible hydrophobic me [...] (307 aa)
Your Current Organism:
Streptomyces coelicolor
NCBI taxonomy Id: 100226
Other names: S. coelicolor A3(2), Streptomyces coelicolor A3(2)
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