STRINGSTRING
SSIL_0023 SSIL_0023 SSIL_2599 SSIL_2599 dut dut deoB deoB SSIL_2250 SSIL_2250 SSIL_2221 SSIL_2221 SSIL_2211 SSIL_2211 deoD deoD SSIL_1827 SSIL_1827 xseB xseB xseA xseA SSIL_2826 SSIL_2826 cshB cshB cdd cdd deoC deoC ymdA ymdA pnp pnp rnhB rnhB SSIL_3059 SSIL_3059 csrA csrA SSIL_3319 SSIL_3319 SSIL_3426 SSIL_3426 SSIL_3361 SSIL_3361 SSIL_1577 SSIL_1577 SSIL_1554 SSIL_1554 mtnN mtnN SSIL_1450 SSIL_1450 SSIL_1410 SSIL_1410 SSIL_1338 SSIL_1338 SSIL_1268 SSIL_1268 rph rph rnhC rnhC SSIL_1054 SSIL_1054 SSIL_0566 SSIL_0566
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SSIL_0023Protein containing tetrapyrrole methyltransferase domain and MazG-like domain. (488 aa)
SSIL_2599Predicted HD superfamily hydrolase. (210 aa)
dutdUTPase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. (147 aa)
deoBPhosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. (392 aa)
SSIL_2250Cytidine deaminase. (141 aa)
SSIL_22215'-nucleotidase/2',3'-cyclic phosphodiesterase; Belongs to the 5'-nucleotidase family. (717 aa)
SSIL_2211Uncharacterized conserved protein; Belongs to the 5'(3')-deoxyribonucleotidase family. (190 aa)
deoDPurine-nucleoside phosphorylase. (235 aa)
SSIL_1827Cytosine/adenosine deaminase. (160 aa)
xseBExonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (75 aa)
xseAExonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (452 aa)
SSIL_28265'-nucleotidase/2',3'-cyclic phosphodiesterase; Belongs to the 5'-nucleotidase family. (480 aa)
cshBSuperfamily II DNA and RNA helicase; Probable DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures. (436 aa)
cddCytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. (135 aa)
deoCDeoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. (222 aa)
ymdAPredicted HD superfamily hydrolase; Endoribonuclease that initiates mRNA decay. (517 aa)
pnpPolyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (704 aa)
rnhBRibonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (257 aa)
SSIL_3059Uncharacterized stress-induced protein. (291 aa)
csrACarbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. (73 aa)
SSIL_3319Hypothetical protein. (855 aa)
SSIL_3426HD superfamily phosphohydrolase. (435 aa)
SSIL_3361Hypothetical protein. (96 aa)
SSIL_1577Uncharacterized conserved protein; Belongs to the 5'(3')-deoxyribonucleotidase family. (191 aa)
SSIL_1554Uncharacterized protein. (181 aa)
mtnNNucleoside phosphorylase; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily. (230 aa)
SSIL_1450Hypothetical protein. (168 aa)
SSIL_1410Predicted pyrophosphatase. (99 aa)
SSIL_13385'-nucleotidase/2',3'-cyclic phosphodiesterase. (787 aa)
SSIL_1268Xanthosine triphosphate pyrophosphatase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. (197 aa)
rphRNase PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. (250 aa)
rnhCRibonuclease HIII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (309 aa)
SSIL_10545'-nucleotidase/2',3'-cyclic phosphodiesterase; Belongs to the 5'-nucleotidase family. (454 aa)
SSIL_0566Hypothetical protein. (146 aa)
Your Current Organism:
Solibacillus silvestris
NCBI taxonomy Id: 1002809
Other names: S. silvestris StLB046, Solibacillus silvestris StLB046, Solibacillus silvestris str. StLB046, Solibacillus silvestris strain StLB046
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