Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SSIL_2969 | SSIL_2983 | SSIL_2969 | SSIL_2983 | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Flagellar biogenesis protein. | 0.731 |
| SSIL_2969 | SSIL_2990 | SSIL_2969 | SSIL_2990 | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein. | 0.874 |
| SSIL_2969 | SSIL_2991 | SSIL_2969 | SSIL_2991 | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Flagellar hook-length control protein. | 0.562 |
| SSIL_2969 | SSIL_2993 | SSIL_2969 | SSIL_2993 | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Flagellar biosynthesis chaperone. | 0.560 |
| SSIL_2969 | SSIL_2995 | SSIL_2969 | SSIL_2995 | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Flagellar biosynthesis/type III secretory pathway protein. | 0.541 |
| SSIL_2969 | SSIL_3271 | SSIL_2969 | SSIL_3271 | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Flagellar capping protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | 0.731 |
| SSIL_2969 | SSIL_3280 | SSIL_2969 | SSIL_3280 | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | 0.717 |
| SSIL_2969 | SSIL_3281 | SSIL_2969 | SSIL_3281 | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | 0.723 |
| SSIL_2969 | SSIL_3285 | SSIL_2969 | SSIL_3285 | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Flagellin. | 0.794 |
| SSIL_2969 | SSIL_3288 | SSIL_2969 | SSIL_3288 | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Negative regulator of flagellin synthesis. | 0.984 |
| SSIL_2969 | flgB | SSIL_2969 | SSIL_3000 | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Flagellar basal body protein; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body. | 0.847 |
| SSIL_2969 | flgC | SSIL_2969 | SSIL_2999 | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family. | 0.889 |
| SSIL_2969 | flgG | SSIL_2969 | SSIL_2988 | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Flagellar basal body rod protein. | 0.779 |
| SSIL_2969 | flgK | SSIL_2969 | SSIL_3286 | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Flagellar hook-associated protein. | 0.880 |
| SSIL_2969 | flhA | SSIL_2969 | SSIL_2978 | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Flagellar biosynthesis pathway, component FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family. | 0.882 |
| SSIL_2969 | flhO | SSIL_2969 | SSIL_3363 | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Flagellar basal body rod protein. | 0.838 |
| SSIL_2969 | flhP | SSIL_2969 | SSIL_3362 | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Flagellar basal body rod protein. | 0.756 |
| SSIL_2969 | fliE | SSIL_2969 | SSIL_2998 | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Flagellar hook-basal body protein. | 0.626 |
| SSIL_2969 | fliF | SSIL_2969 | SSIL_2997 | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Flagellar biosynthesis/type III secretory pathway lipoprotein; The M ring may be actively involved in energy transduction. Belongs to the FliF family. | 0.856 |
| SSIL_2969 | fliG | SSIL_2969 | SSIL_2996 | DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Flagellar motor switch protein. | 0.863 |
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