(11 nodes) Mixed, incl. Ets domain, and Bronchus cartilage development network (Cricetulus griseus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Gabpb1	GA-binding protein subunit beta-1. (383 aa)
	Nhlh1	Helix-loop-helix protein 1. (133 aa)
	I79_006723	Potassium voltage-gated channel subfamily H member 8. (582 aa)
	Elk4	ETS domain-containing protein Elk-4. (430 aa)
	Rreb1	Ras-responsive element-binding protein 1. (1748 aa)
	Gabpa	GA-binding protein alpha chain. (651 aa)
	Zfx	Zinc finger X-chromosomal protein. (799 aa)
	Elk1	ETS domain-containing protein Elk-1. (425 aa)
	Srf	Serum response factor. (361 aa)
	Elf1	ETS-related transcription factor Elf-1. (616 aa)
	Elk3	ETS domain-containing protein Elk-3. (408 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Elk1	Elk4	G3HXI9	G3HAY2	ETS domain-containing protein Elk-1.	ETS domain-containing protein Elk-4.	0.829
Elk1	Srf	G3HXI9	G3HYT2	ETS domain-containing protein Elk-1.	Serum response factor.	0.973
Elk3	I79_006723	Q2EF90	G3H8L9	ETS domain-containing protein Elk-3.	Potassium voltage-gated channel subfamily H member 8.	0.554
Elk3	Srf	Q2EF90	G3HYT2	ETS domain-containing protein Elk-3.	Serum response factor.	0.707
Elk4	Elk1	G3HAY2	G3HXI9	ETS domain-containing protein Elk-4.	ETS domain-containing protein Elk-1.	0.829
Elk4	I79_006723	G3HAY2	G3H8L9	ETS domain-containing protein Elk-4.	Potassium voltage-gated channel subfamily H member 8.	0.614
Elk4	Nhlh1	G3HAY2	G3H7X8	ETS domain-containing protein Elk-4.	Helix-loop-helix protein 1.	0.578
Elk4	Rreb1	G3HAY2	G3HD91	ETS domain-containing protein Elk-4.	Ras-responsive element-binding protein 1.	0.599
Elk4	Srf	G3HAY2	G3HYT2	ETS domain-containing protein Elk-4.	Serum response factor.	0.989
Gabpa	Gabpb1	G3HMG5	G3H050	GA-binding protein alpha chain.	GA-binding protein subunit beta-1.	0.990
Gabpa	Nhlh1	G3HMG5	G3H7X8	GA-binding protein alpha chain.	Helix-loop-helix protein 1.	0.755
Gabpa	Rreb1	G3HMG5	G3HD91	GA-binding protein alpha chain.	Ras-responsive element-binding protein 1.	0.676
Gabpa	Srf	G3HMG5	G3HYT2	GA-binding protein alpha chain.	Serum response factor.	0.450
Gabpa	Zfx	G3HMG5	G3HQ46	GA-binding protein alpha chain.	Zinc finger X-chromosomal protein.	0.677
Gabpb1	Gabpa	G3H050	G3HMG5	GA-binding protein subunit beta-1.	GA-binding protein alpha chain.	0.990
I79_006723	Elk3	G3H8L9	Q2EF90	Potassium voltage-gated channel subfamily H member 8.	ETS domain-containing protein Elk-3.	0.554
I79_006723	Elk4	G3H8L9	G3HAY2	Potassium voltage-gated channel subfamily H member 8.	ETS domain-containing protein Elk-4.	0.614
Nhlh1	Elk4	G3H7X8	G3HAY2	Helix-loop-helix protein 1.	ETS domain-containing protein Elk-4.	0.578
Nhlh1	Gabpa	G3H7X8	G3HMG5	Helix-loop-helix protein 1.	GA-binding protein alpha chain.	0.755
Nhlh1	Rreb1	G3H7X8	G3HD91	Helix-loop-helix protein 1.	Ras-responsive element-binding protein 1.	0.694