(22 nodes) Mixed, incl. RFX DNA-binding domain, and CCAAT-binding factor complex network (Cricetulus griseus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Rfx7	DNA-binding protein RFX7. (1459 aa)
	I79_002131	MHC class II transactivator. (1168 aa)
	I79_003563	Zinc finger transcription factor Trps1. (151 aa)
	Trps1	Zinc finger transcription factor Trps1. (395 aa)
	Neil2	Endonuclease VIII-like 2. (509 aa)
	Rfx5	DNA-binding protein RFX5. (657 aa)
	Rfxank	DNA-binding protein RFXANK. (295 aa)
	Rfx2	DNA-binding protein RFX2. (692 aa)
	Nfyc	Nuclear transcription factor Y subunit gamma. (335 aa)
	Foxj3	Forkhead box protein J3. (606 aa)
	I79_008377	MHC class II regulatory factor RFX1. (863 aa)
	I79_010477	Protein NLRC5. (1513 aa)
	I79_013122	Nuclear transcription factor Y subunit beta. (246 aa)
	Nfic	Nuclear factor 1 C-type. (142 aa)
	Foxj1	Forkhead box protein J1. (421 aa)
	Foxj2	Forkhead box protein J2. (573 aa)
	Abcb9	ATP-binding cassette sub-family B member 9. (762 aa)
	Rfx3	Transcription factor RFX3. (298 aa)
	I79_018917	Transcription factor RFX3. (70 aa)
	Chrac1	Chromatin accessibility complex protein 1. (130 aa)
	Nfya	Nuclear transcription factor Y subunit alpha. (347 aa)
	Nfyb	Nuclear transcription factor Y subunit beta. (169 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Abcb9	I79_010477	G3I4Y8	G3HIK5	ATP-binding cassette sub-family B member 9.	Protein NLRC5.	0.571
Chrac1	I79_003563	G3I7E4	G3H0A8	Chromatin accessibility complex protein 1.	Zinc finger transcription factor Trps1.	0.497
Chrac1	I79_013122	G3I7E4	G3HQL7	Chromatin accessibility complex protein 1.	Nuclear transcription factor Y subunit beta.	0.884
Chrac1	Neil2	G3I7E4	G3H0L6	Chromatin accessibility complex protein 1.	Endonuclease VIII-like 2.	0.497
Chrac1	Nfya	G3I7E4	G3I9V5	Chromatin accessibility complex protein 1.	Nuclear transcription factor Y subunit alpha.	0.953
Chrac1	Nfyb	G3I7E4	G3INH9	Chromatin accessibility complex protein 1.	Nuclear transcription factor Y subunit beta.	0.884
Chrac1	Trps1	G3I7E4	G3H0A9	Chromatin accessibility complex protein 1.	Zinc finger transcription factor Trps1.	0.497
Foxj1	I79_008377	G3HTX0	G3HD04	Forkhead box protein J1.	MHC class II regulatory factor RFX1.	0.403
Foxj1	I79_018917	G3HTX0	G3I606	Forkhead box protein J1.	Transcription factor RFX3.	0.504
Foxj1	Rfx2	G3HTX0	G3HCJ9	Forkhead box protein J1.	DNA-binding protein RFX2.	0.828
Foxj1	Rfx3	G3HTX0	G3I605	Forkhead box protein J1.	Transcription factor RFX3.	0.792
Foxj2	I79_008377	G3I4Q1	G3HD04	Forkhead box protein J2.	MHC class II regulatory factor RFX1.	0.707
I79_002131	I79_008377	G3GWK4	G3HD04	MHC class II transactivator.	MHC class II regulatory factor RFX1.	0.606
I79_002131	Rfx5	G3GWK4	G3H301	MHC class II transactivator.	DNA-binding protein RFX5.	0.834
I79_002131	Rfxank	G3GWK4	G3H472	MHC class II transactivator.	DNA-binding protein RFXANK.	0.725
I79_003563	Chrac1	G3H0A8	G3I7E4	Zinc finger transcription factor Trps1.	Chromatin accessibility complex protein 1.	0.497
I79_003563	I79_013122	G3H0A8	G3HQL7	Zinc finger transcription factor Trps1.	Nuclear transcription factor Y subunit beta.	0.484
I79_003563	Nfyb	G3H0A8	G3INH9	Zinc finger transcription factor Trps1.	Nuclear transcription factor Y subunit beta.	0.484
I79_003563	Nfyc	G3H0A8	G3HCN0	Zinc finger transcription factor Trps1.	Nuclear transcription factor Y subunit gamma.	0.497
I79_003563	Trps1	G3H0A8	G3H0A9	Zinc finger transcription factor Trps1.	Zinc finger transcription factor Trps1.	0.900