40 items (Cricetulus griseus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Lbr	Lamin-B receptor. (619 aa)
	Syne1	Nesprin-1. (1959 aa)
	I79_001170	Nesprin-1. (1360 aa)
	I79_001171	Nesprin-1. (1173 aa)
	Banf2	Barrier-to-autointegration factor-like protein. (90 aa)
	Msrb3	Inner nuclear membrane protein Man1. (479 aa)
	Morn4	MORN repeat-containing protein 4. (217 aa)
	I79_003938	Lamin-L(I); Belongs to the intermediate filament family. (483 aa)
	I79_004294	MORN repeat-containing protein 3. (310 aa)
	Clcn3	Chloride channel protein. (866 aa)
	I79_004743	Intermediate filament tail domain-containing protein 1. (360 aa)
	I79_005353	Nesprin-2. (903 aa)
	I79_005354	Nesprin-2. (54 aa)
	Syne2	Nesprin-2. (1667 aa)
	I79_006364	Kinesin-like protein KIF26B. (158 aa)
	Kif26b	Kinesin-like protein KIF26B. (189 aa)
	Ankle2	Ankyrin repeat and LEM domain-containing protein 2. (896 aa)
	Lmna	Lamin-A/C; Belongs to the intermediate filament family. (563 aa)
	Vrk1	Serine/threonine-protein kinase VRK1; Belongs to the protein kinase superfamily. (396 aa)
	I79_010496	Uncharacterized protein. (282 aa)
	Ccer1	CCER1. (397 aa)
	I79_011620	Formin-like protein 1. (1012 aa)
	Nrm	Nurim-like protein. (262 aa)
	I79_013159	Uncharacterized protein C6orf136-like. (200 aa)
	I79_013526	Integrin alpha-7; Belongs to the integrin alpha chain family. (930 aa)
	Lmnb2	Lamin-B2; Belongs to the intermediate filament family. (602 aa)
	Mecp2	Methyl-CpG-binding protein 2. (203 aa)
	Sun1	Protein unc-84-like A. (916 aa)
	Syne3	Nesprin-3. (975 aa)
	Fhod1	FH1/FH2 domain-containing protein 1. (1182 aa)
	I79_016662	Coiled-coil domain-containing protein 155. (629 aa)
	Banf1	Barrier-to-autointegration factor. (89 aa)
	Sun2	Protein unc-84-like B. (730 aa)
	I79_017678	Lamina-associated polypeptide 2, isoforms alpha/zeta. (319 aa)
	I79_018471	Protein FAM71E1. (174 aa)
	I79_019147	Putative death domain-containing protein FLJ16686. (676 aa)
	Emd	Emerin. (186 aa)
	Morn5	MORN repeat-containing protein 5. (182 aa)
	Tex33	Protein EAN57. (324 aa)
	Gpr153	Putative G-protein coupled receptor 153. (434 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ankle2	Banf1	G3HCD4	G3I2F5	Ankyrin repeat and LEM domain-containing protein 2.	Barrier-to-autointegration factor.	0.881
Ankle2	Banf2	G3HCD4	G3GVX0	Ankyrin repeat and LEM domain-containing protein 2.	Barrier-to-autointegration factor-like protein.	0.621
Ankle2	Emd	G3HCD4	G3IBK3	Ankyrin repeat and LEM domain-containing protein 2.	Emerin.	0.564
Ankle2	I79_003938	G3HCD4	G3H1B3	Ankyrin repeat and LEM domain-containing protein 2.	Lamin-L(I); Belongs to the intermediate filament family.	0.409
Ankle2	Lmna	G3HCD4	G3HG95	Ankyrin repeat and LEM domain-containing protein 2.	Lamin-A/C; Belongs to the intermediate filament family.	0.470
Ankle2	Lmnb2	G3HCD4	G3HSM8	Ankyrin repeat and LEM domain-containing protein 2.	Lamin-B2; Belongs to the intermediate filament family.	0.409
Ankle2	Msrb3	G3HCD4	G3GY05	Ankyrin repeat and LEM domain-containing protein 2.	Inner nuclear membrane protein Man1.	0.445
Ankle2	Vrk1	G3HCD4	G3HHD8	Ankyrin repeat and LEM domain-containing protein 2.	Serine/threonine-protein kinase VRK1; Belongs to the protein kinase superfamily.	0.955
Banf1	Ankle2	G3I2F5	G3HCD4	Barrier-to-autointegration factor.	Ankyrin repeat and LEM domain-containing protein 2.	0.881
Banf1	Emd	G3I2F5	G3IBK3	Barrier-to-autointegration factor.	Emerin.	0.995
Banf1	Fhod1	G3I2F5	G3HZL3	Barrier-to-autointegration factor.	FH1/FH2 domain-containing protein 1.	0.501
Banf1	I79_001170	G3I2F5	G3GU23	Barrier-to-autointegration factor.	Nesprin-1.	0.686
Banf1	I79_001171	G3I2F5	G3GU24	Barrier-to-autointegration factor.	Nesprin-1.	0.686
Banf1	I79_003938	G3I2F5	G3H1B3	Barrier-to-autointegration factor.	Lamin-L(I); Belongs to the intermediate filament family.	0.826
Banf1	I79_004743	G3I2F5	G3H3C8	Barrier-to-autointegration factor.	Intermediate filament tail domain-containing protein 1.	0.772
Banf1	I79_017678	G3I2F5	G3I2N4	Barrier-to-autointegration factor.	Lamina-associated polypeptide 2, isoforms alpha/zeta.	0.676
Banf1	Lbr	G3I2F5	G3GRA0	Barrier-to-autointegration factor.	Lamin-B receptor.	0.809
Banf1	Lmna	G3I2F5	G3HG95	Barrier-to-autointegration factor.	Lamin-A/C; Belongs to the intermediate filament family.	0.963
Banf1	Lmnb2	G3I2F5	G3HSM8	Barrier-to-autointegration factor.	Lamin-B2; Belongs to the intermediate filament family.	0.898
Banf1	Msrb3	G3I2F5	G3GY05	Barrier-to-autointegration factor.	Inner nuclear membrane protein Man1.	0.858