STRINGSTRING
Srsf1 Srsf1 Ncbp2 Ncbp2 Magoh Magoh Upf2 Upf2 I79_001789 I79_001789 Alyref Alyref I79_003328 I79_003328 Thoc3 Thoc3 Srsf5 Srsf5 Srsf4 Srsf4 Rbm8a Rbm8a I79_004945 I79_004945 Upf1 Upf1 I79_006194 I79_006194 I79_006195 I79_006195 I79_006282 I79_006282 I79_006332 I79_006332 Sap18 Sap18 I79_007560 I79_007560 Luc7l Luc7l CgPICR_013588 CgPICR_013588 Ddx39a Ddx39a Srsf6 Srsf6 I79_008647 I79_008647 Srpk2 Srpk2 I79_009538 I79_009538 I79_009610 I79_009610 I79_009734 I79_009734 I79_009968 I79_009968 Thoc7 Thoc7 Smg8 Smg8 Srrm1 Srrm1 Srsf3 Srsf3 Tra2b Tra2b I79_012084 I79_012084 I79_012076 I79_012076 I79_012459 I79_012459 Thoc5 Thoc5 I79_012765 I79_012765 I79_013015 I79_013015 I79_013410 I79_013410 I79_013934 I79_013934 Srsf7 Srsf7 Eif4a3 Eif4a3 I79_014275 I79_014275 Thoc1 Thoc1 I79_014908 I79_014908 I79_015655 I79_015655 U2af2 U2af2 Smg9 Smg9 Thoc6 Thoc6 Poldip3 Poldip3 CgPICR_014751 CgPICR_014751 CgPICR_014750 CgPICR_014750 Rnps1 Rnps1 Nxt1 Nxt1 Casc3 Casc3 I79_018884 I79_018884 Sf1 Sf1 Srsf9 Srsf9 I79_019983 I79_019983 I79_019984 I79_019984 I79_020059 I79_020059 Zrsr2 Zrsr2 I79_020247 I79_020247 Prpf39 Prpf39 I79_021026 I79_021026 I79_021607 I79_021607 I79_021608 I79_021608 Zgrf1 Zgrf1 I79_022365 I79_022365 Prpf40b Prpf40b I79_022489 I79_022489 I79_023004 I79_023004 Upf3b Upf3b Nxf1 Nxf1 I79_023857 I79_023857 Pnn Pnn Smg1 Smg1 I79_024485 I79_024485 I79_025570 I79_025570 I79_025647 I79_025647 I79_025662 I79_025662 I79_025672 I79_025672 I79_025858 I79_025858 I79_025885 I79_025885 I79_026256 I79_026256
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Srsf1Splicing factor, arginine/serine-rich 1, transcript variant 1. (248 aa)
Ncbp2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (156 aa)
MagohProtein mago nashi-like. (146 aa)
Upf2Regulator of nonsense transcripts 2. (540 aa)
I79_001789Regulator of nonsense transcripts 2. (381 aa)
AlyrefTHO complex subunit 4. (187 aa)
I79_003328Regulator of nonsense transcripts 3A. (414 aa)
Thoc3THO complex subunit 3. (381 aa)
Srsf5Splicing factor, arginine/serine-rich 5. (269 aa)
Srsf4Splicing factor, arginine/serine-rich 4. (368 aa)
Rbm8aRNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (171 aa)
I79_004945Splicing factor, arginine/serine-rich 3. (161 aa)
Upf1Regulator of nonsense transcripts 1. (771 aa)
I79_006194Regulator of nonsense transcripts 3B. (154 aa)
I79_006195Regulator of nonsense transcripts 3B. (125 aa)
I79_006282Nuclear cap-binding protein subunit 1. (581 aa)
I79_006332THO complex subunit 1. (211 aa)
Sap18Histone deacetylase complex subunit SAP18. (91 aa)
I79_007560Protein SMG5. (773 aa)
Luc7lPutative RNA-binding protein Luc7-like 1. (318 aa)
CgPICR_013588CHTOP. (249 aa)
Ddx39aATP-dependent RNA helicase DDX39. (424 aa)
Srsf6Splicing factor, arginine/serine-rich 6. (210 aa)
I79_008647U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1. (427 aa)
Srpk2Serine/threonine-protein kinase SRPK2. (583 aa)
I79_009538Protein SMG7. (459 aa)
I79_009610Protein SMG5. (934 aa)
I79_009734SAP domain-containing ribonucleoprotein. (106 aa)
I79_009968Putative RNA-binding protein Luc7-like 2. (329 aa)
Thoc7THO complex subunit 7-like. (152 aa)
Smg8Protein SMG8. (980 aa)
Srrm1Serine/arginine repetitive matrix protein 1. (178 aa)
Srsf3Splicing factor, arginine/serine-rich 3. (164 aa)
Tra2bTransformer-2 protein-like beta. (288 aa)
I79_012084Serine/arginine repetitive matrix protein 1. (866 aa)
I79_012076FUS-interacting serine-arginine-rich protein 1. (72 aa)
I79_012459Splicing factor U2AF 35 kDa subunit. (98 aa)
Thoc5THO complex subunit 5-like. (683 aa)
I79_012765U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (469 aa)
I79_013015Zinc finger CCCH domain-containing protein 11A. (522 aa)
I79_013410Apoptotic chromatin condensation inducer in the nucleus. (1230 aa)
I79_013934Trnau1ap domain-containing protein. (158 aa)
Srsf7Splicing factor, arginine/serine-rich 7. (227 aa)
Eif4a3Eukaryotic initiation factor 4A-III. (279 aa)
I79_014275RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (179 aa)
Thoc1THO complex subunit 1. (350 aa)
I79_014908Telomerase-binding protein EST1A. (1259 aa)
I79_015655Nuclear RNA export factor 2. (620 aa)
U2af2U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (422 aa)
Smg9Protein SMG9. (199 aa)
Thoc6Putative THO complex subunit 6 like protein. (341 aa)
Poldip3Polymerase delta-interacting protein 3. (373 aa)
CgPICR_014751Eukaryotic initiation factor 4A-III. (250 aa)
CgPICR_014750Eukaryotic initiation factor 4A-III. (115 aa)
Rnps1RNA-binding protein with serine-rich domain 1. (248 aa)
Nxt1NTF2-related export protein 1. (140 aa)
Casc3Protein CASC3. (620 aa)
I79_018884Killer cell lectin-like receptor 2. (274 aa)
Sf1Splicing factor 1. (522 aa)
Srsf9Splicing factor, arginine/serine-rich 9. (91 aa)
I79_019983THO complex subunit 2. (140 aa)
I79_019984THO complex subunit 2. (630 aa)
I79_020059U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1. (181 aa)
Zrsr2U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2. (138 aa)
I79_020247Heterogeneous nuclear ribonucleoprotein M. (104 aa)
Prpf39Pre-mRNA-processing factor 39. (417 aa)
I79_021026Pre-mRNA-processing factor 39. (132 aa)
I79_021607Uncharacterized protein FLJ44066. (351 aa)
I79_021608Uncharacterized protein FLJ44066. (98 aa)
Zgrf1Uncharacterized protein C4orf21-like. (367 aa)
I79_022365Polymerase delta-interacting protein 3. (108 aa)
Prpf40bPre-mRNA-processing factor 40-like B. (389 aa)
I79_022489Uncharacterized protein. (221 aa)
I79_023004Serrate RNA effector molecule-like. (841 aa)
Upf3bRegulator of nonsense transcripts 3B. (89 aa)
Nxf1Nuclear RNA export factor 1-like protein. (621 aa)
I79_023857Transcription elongation regulator 1-like protein. (237 aa)
PnnPinin. (726 aa)
Smg1Serine/threonine-protein kinase SMG1. (1704 aa)
I79_024485THO complex subunit 2. (1588 aa)
I79_025570Spliceosome RNA helicase Bat1. (229 aa)
I79_025647Uncharacterized protein C1orf77-like. (65 aa)
I79_025662Uncharacterized protein C1orf77-like. (128 aa)
I79_025672Spliceosome RNA helicase BAT1. (155 aa)
I79_025858Spliceosome RNA helicase BAT1. (66 aa)
I79_025885Telomerase-binding protein EST1A. (50 aa)
I79_026256Spliceosome RNA helicase Bat1. (103 aa)
Your Current Organism:
Cricetulus griseus
NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus
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