(44 nodes) Mixed, incl. Transcription export complex, and U2AF complex network (Cricetulus griseus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Srsf1	Splicing factor, arginine/serine-rich 1, transcript variant 1. (248 aa)
	Alyref	THO complex subunit 4. (187 aa)
	Thoc3	THO complex subunit 3. (381 aa)
	Srsf5	Splicing factor, arginine/serine-rich 5. (269 aa)
	Srsf4	Splicing factor, arginine/serine-rich 4. (368 aa)
	I79_004945	Splicing factor, arginine/serine-rich 3. (161 aa)
	I79_006332	THO complex subunit 1. (211 aa)
	CgPICR_013588	CHTOP. (249 aa)
	Ddx39a	ATP-dependent RNA helicase DDX39. (424 aa)
	Srsf6	Splicing factor, arginine/serine-rich 6. (210 aa)
	I79_008647	U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1. (427 aa)
	Srpk2	Serine/threonine-protein kinase SRPK2. (583 aa)
	I79_009734	SAP domain-containing ribonucleoprotein. (106 aa)
	Thoc7	THO complex subunit 7-like. (152 aa)
	Srsf3	Splicing factor, arginine/serine-rich 3. (164 aa)
	Tra2b	Transformer-2 protein-like beta. (288 aa)
	I79_012076	FUS-interacting serine-arginine-rich protein 1. (72 aa)
	I79_012459	Splicing factor U2AF 35 kDa subunit. (98 aa)
	Thoc5	THO complex subunit 5-like. (683 aa)
	I79_012765	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (469 aa)
	I79_013015	Zinc finger CCCH domain-containing protein 11A. (522 aa)
	Srsf7	Splicing factor, arginine/serine-rich 7. (227 aa)
	Eif4a3	Eukaryotic initiation factor 4A-III. (279 aa)
	Thoc1	THO complex subunit 1. (350 aa)
	I79_015655	Nuclear RNA export factor 2. (620 aa)
	U2af2	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (422 aa)
	Thoc6	Putative THO complex subunit 6 like protein. (341 aa)
	Poldip3	Polymerase delta-interacting protein 3. (373 aa)
	Nxt1	NTF2-related export protein 1. (140 aa)
	Sf1	Splicing factor 1. (522 aa)
	Srsf9	Splicing factor, arginine/serine-rich 9. (91 aa)
	I79_019983	THO complex subunit 2. (140 aa)
	I79_019984	THO complex subunit 2. (630 aa)
	I79_020059	U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1. (181 aa)
	Zrsr2	U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2. (138 aa)
	I79_020247	Heterogeneous nuclear ribonucleoprotein M. (104 aa)
	Nxf1	Nuclear RNA export factor 1-like protein. (621 aa)
	I79_024485	THO complex subunit 2. (1588 aa)
	I79_025570	Spliceosome RNA helicase Bat1. (229 aa)
	I79_025647	Uncharacterized protein C1orf77-like. (65 aa)
	I79_025662	Uncharacterized protein C1orf77-like. (128 aa)
	I79_025672	Spliceosome RNA helicase BAT1. (155 aa)
	I79_025858	Spliceosome RNA helicase BAT1. (66 aa)
	I79_026256	Spliceosome RNA helicase Bat1. (103 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Alyref	CgPICR_013588	G3GXB1	G3HC20	THO complex subunit 4.	CHTOP.	0.731
Alyref	Ddx39a	G3GXB1	G3HD18	THO complex subunit 4.	ATP-dependent RNA helicase DDX39.	0.888
Alyref	Eif4a3	G3GXB1	G3HTE6	THO complex subunit 4.	Eukaryotic initiation factor 4A-III.	0.950
Alyref	I79_004945	G3GXB1	G3H3V5	THO complex subunit 4.	Splicing factor, arginine/serine-rich 3.	0.734
Alyref	I79_006332	G3GXB1	G3H7K0	THO complex subunit 4.	THO complex subunit 1.	0.988
Alyref	I79_009734	G3GXB1	G3HGJ6	THO complex subunit 4.	SAP domain-containing ribonucleoprotein.	0.965
Alyref	I79_012459	G3GXB1	G3HNW3	THO complex subunit 4.	Splicing factor U2AF 35 kDa subunit.	0.747
Alyref	I79_012765	G3GXB1	G3HPQ0	THO complex subunit 4.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.803
Alyref	I79_013015	G3GXB1	G3HQB8	THO complex subunit 4.	Zinc finger CCCH domain-containing protein 11A.	0.651
Alyref	I79_015655	G3GXB1	G3HXD5	THO complex subunit 4.	Nuclear RNA export factor 2.	0.988
Alyref	I79_019983	G3GXB1	G3I8V1	THO complex subunit 4.	THO complex subunit 2.	0.920
Alyref	I79_019984	G3GXB1	G3I8V2	THO complex subunit 4.	THO complex subunit 2.	0.920
Alyref	I79_020247	G3GXB1	G3I9J9	THO complex subunit 4.	Heterogeneous nuclear ribonucleoprotein M.	0.576
Alyref	I79_024485	G3GXB1	G3IKT2	THO complex subunit 4.	THO complex subunit 2.	0.991
Alyref	I79_025570	G3GXB1	G3INP0	THO complex subunit 4.	Spliceosome RNA helicase Bat1.	0.883
Alyref	I79_025647	G3GXB1	G3INV6	THO complex subunit 4.	Uncharacterized protein C1orf77-like.	0.731
Alyref	I79_025662	G3GXB1	G3INW7	THO complex subunit 4.	Uncharacterized protein C1orf77-like.	0.731
Alyref	I79_025672	G3GXB1	G3INX6	THO complex subunit 4.	Spliceosome RNA helicase BAT1.	0.883
Alyref	I79_025858	G3GXB1	G3IPF1	THO complex subunit 4.	Spliceosome RNA helicase BAT1.	0.883
Alyref	I79_026256	G3GXB1	G3IQD3	THO complex subunit 4.	Spliceosome RNA helicase Bat1.	0.883