(5 nodes) C-terminal domain of vertebrate Tap protein, and C5-methylcytidine-containing RNA binding network (Cricetulus griseus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Alyref	THO complex subunit 4. (187 aa)
	Eif4a3	Eukaryotic initiation factor 4A-III. (279 aa)
	I79_015655	Nuclear RNA export factor 2. (620 aa)
	Nxt1	NTF2-related export protein 1. (140 aa)
	Nxf1	Nuclear RNA export factor 1-like protein. (621 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Alyref	Eif4a3	G3GXB1	G3HTE6	THO complex subunit 4.	Eukaryotic initiation factor 4A-III.	0.950
Alyref	I79_015655	G3GXB1	G3HXD5	THO complex subunit 4.	Nuclear RNA export factor 2.	0.988
Alyref	Nxf1	G3GXB1	G3II27	THO complex subunit 4.	Nuclear RNA export factor 1-like protein.	0.991
Alyref	Nxt1	G3GXB1	G3I3T3	THO complex subunit 4.	NTF2-related export protein 1.	0.603
Eif4a3	Alyref	G3HTE6	G3GXB1	Eukaryotic initiation factor 4A-III.	THO complex subunit 4.	0.950
Eif4a3	I79_015655	G3HTE6	G3HXD5	Eukaryotic initiation factor 4A-III.	Nuclear RNA export factor 2.	0.941
Eif4a3	Nxf1	G3HTE6	G3II27	Eukaryotic initiation factor 4A-III.	Nuclear RNA export factor 1-like protein.	0.943
I79_015655	Alyref	G3HXD5	G3GXB1	Nuclear RNA export factor 2.	THO complex subunit 4.	0.988
I79_015655	Eif4a3	G3HXD5	G3HTE6	Nuclear RNA export factor 2.	Eukaryotic initiation factor 4A-III.	0.941
I79_015655	Nxf1	G3HXD5	G3II27	Nuclear RNA export factor 2.	Nuclear RNA export factor 1-like protein.	0.913
I79_015655	Nxt1	G3HXD5	G3I3T3	Nuclear RNA export factor 2.	NTF2-related export protein 1.	0.978
Nxf1	Alyref	G3II27	G3GXB1	Nuclear RNA export factor 1-like protein.	THO complex subunit 4.	0.991
Nxf1	Eif4a3	G3II27	G3HTE6	Nuclear RNA export factor 1-like protein.	Eukaryotic initiation factor 4A-III.	0.943
Nxf1	I79_015655	G3II27	G3HXD5	Nuclear RNA export factor 1-like protein.	Nuclear RNA export factor 2.	0.913
Nxf1	Nxt1	G3II27	G3I3T3	Nuclear RNA export factor 1-like protein.	NTF2-related export protein 1.	0.986
Nxt1	Alyref	G3I3T3	G3GXB1	NTF2-related export protein 1.	THO complex subunit 4.	0.603
Nxt1	I79_015655	G3I3T3	G3HXD5	NTF2-related export protein 1.	Nuclear RNA export factor 2.	0.978
Nxt1	Nxf1	G3I3T3	G3II27	NTF2-related export protein 1.	Nuclear RNA export factor 1-like protein.	0.986