STRINGSTRING
LSM3 LSM3 CgPICR_018104 CgPICR_018104 Sf3b6 Sf3b6 Snrnp200 Snrnp200 Ddx46 Ddx46 Sf3b4 Sf3b4 Prpf3 Prpf3 Snrpb Snrpb LSM4 LSM4 Snrpa1 Snrpa1 Sf3b5 Sf3b5 I79_006299 I79_006299 Lsm6 Lsm6 Sf3b3 Sf3b3 Txnl4b Txnl4b Snrpf Snrpf Ddx42 Ddx42 Sf3a3 Sf3a3 Sf3a2 Sf3a2 Lsm7 Lsm7 CgPICR_013477 CgPICR_013477 SNRPD1 SNRPD1 I79_009902 I79_009902 I79_010162 I79_010162 Prpf4 Prpf4 Sf3b1 Sf3b1 Eftud2 Eftud2 LSM5 LSM5 I79_012406 I79_012406 LSM8 LSM8 Zmat5 Zmat5 SNRPD2 SNRPD2 Usp39 Usp39 Snrpe Snrpe I79_014011 I79_014011 I79_014984 I79_014984 I79_015143 I79_015143 I79_015729 I79_015729 Snrpd3 Snrpd3 Snrpb2 Snrpb2 Lsm2 Lsm2 Snrnp70 Snrnp70 Sf3a1 Sf3a1 I79_017249 I79_017249 I79_017595 I79_017595 Sart1 Sart1 Prpf31 Prpf31 Snrnp35 Snrnp35 Phf5a Phf5a I79_018866 I79_018866 Ddx23 Ddx23 I79_021114 I79_021114 Ppih Ppih I79_022290 I79_022290 Lrrc51 Lrrc51 I79_023508 I79_023508 I79_024025 I79_024025 I79_024174 I79_024174
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (103 aa)
CgPICR_018104Small nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (92 aa)
Sf3b6Pre-mRNA branch site protein p14. (125 aa)
Snrnp200U5 small nuclear ribonucleoprotein 200 kDa helicase. (1377 aa)
Ddx46Putative ATP-dependent RNA helicase DDX46. (1172 aa)
Sf3b4Splicing factor 3B subunit 4-like protein. (424 aa)
Prpf3U4/U6 small nuclear ribonucleoprotein Prp3. (683 aa)
SnrpbSmall nuclear ribonucleoprotein-associated protein. (223 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (124 aa)
Snrpa1U2 small nuclear ribonucleoprotein A. (95 aa)
Sf3b5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
I79_006299Splicing factor 3B subunit 5. (79 aa)
Lsm6U6 snRNA-associated Sm-like protein LSm6. (80 aa)
Sf3b3Splicing factor 3B subunit 3. (1217 aa)
Txnl4bThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
SnrpfSmall nuclear ribonucleoprotein F. (67 aa)
Ddx42ATP-dependent RNA helicase DDX42. (928 aa)
Sf3a3Splicing factor 3A subunit 3. (501 aa)
Sf3a2Splicing factor 3A subunit 2. (520 aa)
Lsm7U6 snRNA-associated Sm-like protein LSm7. (104 aa)
CgPICR_013477Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (76 aa)
SNRPD1Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. (119 aa)
I79_009902Pre-mRNA-processing factor 6. (368 aa)
I79_010162Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (76 aa)
Prpf4U4/U6 small nuclear ribonucleoprotein Prp4. (521 aa)
Sf3b1Splicing factor 3B subunit 1-like protein. (1304 aa)
Eftud2116 kDa U5 small nuclear ribonucleoprotein component. (972 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (62 aa)
I79_012406U1 small nuclear ribonucleoprotein A. (291 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (75 aa)
Zmat5Zinc finger matrin-type protein 5. (170 aa)
SNRPD2Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (108 aa)
Usp39U4/U6.U5 tri-snRNP-associated protein 2. (564 aa)
SnrpeSmall nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (92 aa)
I79_014011Thioredoxin-like protein 4A. (91 aa)
I79_014984Squamous cell carcinoma antigen recognized by T-cells 3. (803 aa)
I79_015143Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (76 aa)
I79_015729Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (82 aa)
Snrpd3Small nuclear ribonucleoprotein Sm D3. (84 aa)
Snrpb2U2 small nuclear ribonucleoprotein B. (180 aa)
Lsm2U6 snRNA-associated Sm-like protein LSm2. (94 aa)
Snrnp70U1 small nuclear ribonucleoprotein 70 kDa. (445 aa)
Sf3a1Splicing factor 3A subunit 1 isoform 1. (793 aa)
I79_017249Small nuclear ribonucleoprotein-associated protein. (232 aa)
I79_017595Splicing factor 3B subunit 2. (935 aa)
Sart1U4/U6.U5 tri-snRNP-associated protein 1. (1215 aa)
Prpf31U4/U6 small nuclear ribonucleoprotein Prp31. (441 aa)
Snrnp35U11/U12 small nuclear ribonucleoprotein 35 kDa protein. (246 aa)
Phf5aPHD finger-like domain-containing protein 5A. (168 aa)
I79_018866U7 snRNA-associated Sm-like protein LSm10. (73 aa)
Ddx23Putative ATP-dependent RNA helicase DDX23. (819 aa)
I79_021114Pre-mRNA-processing factor 6. (535 aa)
PpihPeptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (134 aa)
I79_022290U2 small nuclear ribonucleoprotein B. (113 aa)
Lrrc51Leucine-rich repeat-containing protein 51-like isoform 2. (192 aa)
I79_023508PHD finger-like domain-containing protein 5A. (180 aa)
I79_024025NHP2-like protein 1. (73 aa)
I79_024174U1 small nuclear ribonucleoprotein A. (104 aa)
Your Current Organism:
Cricetulus griseus
NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus
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