STRINGSTRING
CgPICR_018104 CgPICR_018104 Sf3b6 Sf3b6 Ddx46 Ddx46 Sf3b4 Sf3b4 Snrpb Snrpb Snrpa1 Snrpa1 Sf3b5 Sf3b5 I79_006299 I79_006299 Sf3b3 Sf3b3 Snrpf Snrpf Ddx42 Ddx42 Sf3a3 Sf3a3 Sf3a2 Sf3a2 CgPICR_013477 CgPICR_013477 SNRPD1 SNRPD1 I79_010162 I79_010162 Sf3b1 Sf3b1 Zmat5 Zmat5 SNRPD2 SNRPD2 Snrpe Snrpe I79_015143 I79_015143 Snrpd3 Snrpd3 Sf3a1 Sf3a1 I79_017249 I79_017249 I79_017595 I79_017595 Snrnp35 Snrnp35 Phf5a Phf5a I79_018866 I79_018866 I79_023508 I79_023508
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CgPICR_018104Small nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (92 aa)
Sf3b6Pre-mRNA branch site protein p14. (125 aa)
Ddx46Putative ATP-dependent RNA helicase DDX46. (1172 aa)
Sf3b4Splicing factor 3B subunit 4-like protein. (424 aa)
SnrpbSmall nuclear ribonucleoprotein-associated protein. (223 aa)
Snrpa1U2 small nuclear ribonucleoprotein A. (95 aa)
Sf3b5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
I79_006299Splicing factor 3B subunit 5. (79 aa)
Sf3b3Splicing factor 3B subunit 3. (1217 aa)
SnrpfSmall nuclear ribonucleoprotein F. (67 aa)
Ddx42ATP-dependent RNA helicase DDX42. (928 aa)
Sf3a3Splicing factor 3A subunit 3. (501 aa)
Sf3a2Splicing factor 3A subunit 2. (520 aa)
CgPICR_013477Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (76 aa)
SNRPD1Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. (119 aa)
I79_010162Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (76 aa)
Sf3b1Splicing factor 3B subunit 1-like protein. (1304 aa)
Zmat5Zinc finger matrin-type protein 5. (170 aa)
SNRPD2Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (108 aa)
SnrpeSmall nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (92 aa)
I79_015143Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (76 aa)
Snrpd3Small nuclear ribonucleoprotein Sm D3. (84 aa)
Sf3a1Splicing factor 3A subunit 1 isoform 1. (793 aa)
I79_017249Small nuclear ribonucleoprotein-associated protein. (232 aa)
I79_017595Splicing factor 3B subunit 2. (935 aa)
Snrnp35U11/U12 small nuclear ribonucleoprotein 35 kDa protein. (246 aa)
Phf5aPHD finger-like domain-containing protein 5A. (168 aa)
I79_018866U7 snRNA-associated Sm-like protein LSm10. (73 aa)
I79_023508PHD finger-like domain-containing protein 5A. (180 aa)
Your Current Organism:
Cricetulus griseus
NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus
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