8 items (Cricetulus griseus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Ddx46	Putative ATP-dependent RNA helicase DDX46. (1172 aa)
	Snrpa1	U2 small nuclear ribonucleoprotein A. (95 aa)
	Sf3a3	Splicing factor 3A subunit 3. (501 aa)
	Sf3a2	Splicing factor 3A subunit 2. (520 aa)
	SNRPD2	Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (108 aa)
	Sf3a1	Splicing factor 3A subunit 1 isoform 1. (793 aa)
	I79_017249	Small nuclear ribonucleoprotein-associated protein. (232 aa)
	I79_017595	Splicing factor 3B subunit 2. (935 aa)

Your Current Organism:

Cricetulus griseus

NCBI taxonomy Id: 10029
Other names: C. griseus, CHO cell lines, Chinese hamster, Chinese hamsters, Cricetulus aureus, Cricetulus barabensis griseus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ddx46	I79_017249	G3H160	G3I1I8	Putative ATP-dependent RNA helicase DDX46.	Small nuclear ribonucleoprotein-associated protein.	0.975
Ddx46	I79_017595	G3H160	G3I2F2	Putative ATP-dependent RNA helicase DDX46.	Splicing factor 3B subunit 2.	0.977
Ddx46	SNRPD2	G3H160	G3HPF1	Putative ATP-dependent RNA helicase DDX46.	Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome.	0.961
Ddx46	Sf3a1	G3H160	G3I142	Putative ATP-dependent RNA helicase DDX46.	Splicing factor 3A subunit 1 isoform 1.	0.995
Ddx46	Sf3a2	G3H160	G3HFB4	Putative ATP-dependent RNA helicase DDX46.	Splicing factor 3A subunit 2.	0.992
Ddx46	Sf3a3	G3H160	G3HE04	Putative ATP-dependent RNA helicase DDX46.	Splicing factor 3A subunit 3.	0.993
Ddx46	Snrpa1	G3H160	G3H5A2	Putative ATP-dependent RNA helicase DDX46.	U2 small nuclear ribonucleoprotein A.	0.988
I79_017249	Ddx46	G3I1I8	G3H160	Small nuclear ribonucleoprotein-associated protein.	Putative ATP-dependent RNA helicase DDX46.	0.975
I79_017249	I79_017595	G3I1I8	G3I2F2	Small nuclear ribonucleoprotein-associated protein.	Splicing factor 3B subunit 2.	0.993
I79_017249	SNRPD2	G3I1I8	G3HPF1	Small nuclear ribonucleoprotein-associated protein.	Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome.	0.999
I79_017249	Sf3a1	G3I1I8	G3I142	Small nuclear ribonucleoprotein-associated protein.	Splicing factor 3A subunit 1 isoform 1.	0.988
I79_017249	Sf3a2	G3I1I8	G3HFB4	Small nuclear ribonucleoprotein-associated protein.	Splicing factor 3A subunit 2.	0.985
I79_017249	Sf3a3	G3I1I8	G3HE04	Small nuclear ribonucleoprotein-associated protein.	Splicing factor 3A subunit 3.	0.987
I79_017249	Snrpa1	G3I1I8	G3H5A2	Small nuclear ribonucleoprotein-associated protein.	U2 small nuclear ribonucleoprotein A.	0.995
I79_017595	Ddx46	G3I2F2	G3H160	Splicing factor 3B subunit 2.	Putative ATP-dependent RNA helicase DDX46.	0.977
I79_017595	I79_017249	G3I2F2	G3I1I8	Splicing factor 3B subunit 2.	Small nuclear ribonucleoprotein-associated protein.	0.993
I79_017595	SNRPD2	G3I2F2	G3HPF1	Splicing factor 3B subunit 2.	Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome.	0.991
I79_017595	Sf3a1	G3I2F2	G3I142	Splicing factor 3B subunit 2.	Splicing factor 3A subunit 1 isoform 1.	0.991
I79_017595	Sf3a2	G3I2F2	G3HFB4	Splicing factor 3B subunit 2.	Splicing factor 3A subunit 2.	0.994
I79_017595	Sf3a3	G3I2F2	G3HE04	Splicing factor 3B subunit 2.	Splicing factor 3A subunit 3.	0.995